Sgif012529.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000087.1:2336-11402[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.1 4.2e+02 2.5 0.1 3 11 63 71 61 77 0.81 2 13 0.00034 0.048 14.9 0.3 1 23 252 274 252 274 0.95 3 13 0.00011 0.015 16.5 1.8 1 23 282 304 282 304 0.98 4 13 1.9e-05 0.0027 18.9 0.2 3 23 313 333 311 333 0.97 5 13 0.00074 0.1 13.9 0.9 5 23 342 360 340 360 0.97 6 13 0.00012 0.016 16.4 4.1 1 23 367 389 367 389 0.98 7 13 7.1e-06 0.00099 20.2 0.1 1 23 395 417 395 417 0.96 8 13 1.2e-05 0.0017 19.5 0.4 1 23 423 445 423 445 0.98 9 13 2.4e-07 3.3e-05 24.9 1.6 1 23 451 474 451 474 0.96 10 13 4e-06 0.00056 21.0 0.4 1 23 480 503 480 503 0.96 11 13 5.2e-06 0.00073 20.6 2.8 1 23 509 531 509 531 0.99 12 13 0.00011 0.015 16.5 0.4 1 23 537 559 537 559 0.94 13 13 0.00013 0.018 16.3 0.1 1 23 565 589 565 589 0.93
Sequence Information
- Coding Sequence
- ATGACATCTGACTCTGAAAAGTATCACTCTAGCTGTTTGATATGTAACAGTAAACTATCAACTAGAAACACTGTAGCAATTTTTAGTGAAAAATTAGGATCTCGACTCGAAAAACCTCTTTCAGAAATAATTTTTTCTGTATTGGAAATTGACAGGAGCAGTAAAAATACACACTCTAATGTTATTTGCAGAAAGTGTAAAAAAATGTTCGACGAGGTGGACGCATTAGAATATCGTATGTCTGAAATAAAAAATGACATTTTTAACTGTTATAAGCAGACCATAAAAAAAATACAGTCAAATGACGAAGAGTATAATGACCATGATTATTTGGACACATCTGAAACGCCCATCCAAGAATTAGCAAGTGTTAAACCAAATCCCGTTTTTAGACAACGAAGTGAAGCTACAAAATCAGTTGAAAACAAAAATAAATATGAAATTAAAGAGGATGAAAACGATATTGATGACAATGGAACTTCTGACAACGATGTTTCTGATCTCGTAGAATCGATTAAAGAAGATGATAAAGAAGTGGTTATTAAAGTTGAAGCATTGGACGATATAAACGGAGAAACAAAAGGACTTTACTTTAAAAAGTCAAAAACTAATACTAAAGAGGAAAATGTACAAGATCAGGTTGTATCTCAAGAAGGCTCACTATACACGTGTTTATTATGTTCCCGTAATTGTGAAAAAGGAGATGCAAAATTCATTATAGCACACTTAAGAACAAAACACAATGTTCGGTTGTATATATGTGATTTATGTGGACTGAAATTCAGGAAAAGAACTGATCTTTCTGTTCATCTTGATGATCACGTTGCAAAAGAGGAAGGAGACTTTCAGTGTGAGAATTGCAACAGAATATTTAACAATTTGCGACTTTTTAGAATTCATAAGCGCATTCATTATCCGCAAACTAAATCCTGGGCATGTGAAGTCTGCGGCAAACGTTACAGTTCTAGAAATTTGCTAGAGGAACATACTAATACCCATACTGGAAATCGGCCTTACATGTGTAAGTGTGGAAAAGATTTTGCCTCAAAGTATACATACAAGGCGCACGTCAAAACGCACGAATTCCGGCCACGACCTTTTGAATGCTCGCATTGTAATAAAACGTTCTTGAGTCAGCAAAATCTTAGTCAACATGAAAGAACTCATAATGGTATTAAGGAATACGTATGCGATCAGTGTGGTAAAGCTTTTGGGTCACCACATAATCTGGAAGTTCATAGCATAGTCCATACTGGTAACAAACCCTATAGTTGCAGGACTTGTGGCAAAGCATTTGCCAGAAAAGCTGAAATTAGAGATCATGAAAGAACTCATACAGGTGAAAAACCATACCAATGTGAACATTGTGGCGCCGTTTTTAGTCAAAGATCGAATTTGCAGTCTCACAAACGTGCAACTCACTACAATGACAAAAGATACAAATGCGATATCTGCGGAAAGGGATTTAAGCGACGTAGACTTTTAGATTATCATATAAAAGCAGCTCATACTGGAGAACGTCCATATAAATGCGAGACTTGTACGGCAACGTTTGTTTATCCTGAACACTTCAAGAAGCACATGCGCATTCATACAGGAGAAAAGCCATTCTTGTGTGAAGTGTGCGGTAAAGCATTTAACAGCCGAGATAATAGGAATGCTCATCGCTTTATACACAGTGACAAAAAACCATATGAGTGCTTGGTTTGTGGCACGGGATTCATGAGGAAACCTCTTTTGTATGCTCATATGCGATCACAGGGCCATCTGAACGACACGATTGTTGTGAACCAACCAAGATTAACGACAGAAGATGATCAAATTATCACTGTCTCAGAAGGCAATGTGGAGCTGTTGATGGAAAACGCTGAAGTTGAACAGTTGGATGAAACGGAATTATACGTAGCAGGTATAAAAAATCACGTTATCATACATCAGGACGGTAATCAGATATACCATGAAGGAAATGTTTTGAGTATTCCTGCCGATGGACAAATATCCACTAACCATGTTCAACATCTAGTTGTTGATGGACAGCTTCTAGAAAATGATGACGATGAATCTAAAGAAGAGATGGAAGATGACGAAGAATTGTATAGTTACGAAGATGATGAACACGGTGAAACTCTAGTGCTACCGGGAACTTCTGAATACAAGGAAATCCTGGGAGATTCTAAAAATGCAGTTAGATTAGTACAAATCAGAATTCCTACTTCTTCTGCAGGAGATGGAAGAAATTGGCTAACTGTTCATTTTACGCTTTGCGTTTTGCGCCCACATGGGACGGCATCCTCGGATACAGTAGAATGCATGGATTCCTTCCCTCGTAAACTTGTCAACCCAACCCTGGTTTCCATTAGAATCTTTGGAAACCAGGATTGGGTTGACATGTTTACGAGGGAAGGCATATATGAATGTGAAGGCCTGATTACACGCTTTTAG
- Protein Sequence
- MTSDSEKYHSSCLICNSKLSTRNTVAIFSEKLGSRLEKPLSEIIFSVLEIDRSSKNTHSNVICRKCKKMFDEVDALEYRMSEIKNDIFNCYKQTIKKIQSNDEEYNDHDYLDTSETPIQELASVKPNPVFRQRSEATKSVENKNKYEIKEDENDIDDNGTSDNDVSDLVESIKEDDKEVVIKVEALDDINGETKGLYFKKSKTNTKEENVQDQVVSQEGSLYTCLLCSRNCEKGDAKFIIAHLRTKHNVRLYICDLCGLKFRKRTDLSVHLDDHVAKEEGDFQCENCNRIFNNLRLFRIHKRIHYPQTKSWACEVCGKRYSSRNLLEEHTNTHTGNRPYMCKCGKDFASKYTYKAHVKTHEFRPRPFECSHCNKTFLSQQNLSQHERTHNGIKEYVCDQCGKAFGSPHNLEVHSIVHTGNKPYSCRTCGKAFARKAEIRDHERTHTGEKPYQCEHCGAVFSQRSNLQSHKRATHYNDKRYKCDICGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGTGFMRKPLLYAHMRSQGHLNDTIVVNQPRLTTEDDQIITVSEGNVELLMENAEVEQLDETELYVAGIKNHVIIHQDGNQIYHEGNVLSIPADGQISTNHVQHLVVDGQLLENDDDESKEEMEDDEELYSYEDDEHGETLVLPGTSEYKEILGDSKNAVRLVQIRIPTSSAGDGRNWLTVHFTLCVLRPHGTASSDTVECMDSFPRKLVNPTLVSIRIFGNQDWVDMFTREGIYECEGLITRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392960;
- 90% Identity
- iTF_01392960;
- 80% Identity
- -