Sgif014532.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010018415.1:383943-386689[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.9 1.1e+03 1.2 0.3 2 16 23 37 22 38 0.87 2 12 0.00013 0.018 16.2 0.9 3 23 283 303 281 303 0.96 3 12 9.2e-05 0.013 16.7 0.7 1 23 311 334 311 334 0.97 4 12 0.00015 0.021 16.1 2.6 1 23 368 390 368 390 0.98 5 12 3e-07 4.1e-05 24.6 1.6 2 23 435 456 434 456 0.97 6 12 0.00013 0.019 16.2 0.3 1 23 461 484 461 484 0.92 7 12 8.9e-07 0.00012 23.1 0.3 1 23 523 545 523 545 0.98 8 12 7.8e-07 0.00011 23.2 0.9 1 23 555 577 555 577 0.96 9 12 9.9e-07 0.00014 22.9 1.4 1 23 583 605 583 605 0.99 10 12 1.1e-05 0.0016 19.6 0.2 1 23 611 633 611 633 0.98 11 12 3.1e-05 0.0043 18.2 4.4 1 23 639 661 639 661 0.98 12 12 0.0019 0.26 12.6 0.2 1 21 667 687 667 688 0.94
Sequence Information
- Coding Sequence
- ATGGAGGTAGAAGATTGCAAAAATAGCATTGAAAATATCAGAGCAACCGAACATAACTCTGATAAACAATGCCGAATTTGTTTAAAATCCTCTACTTCACACTGGGATTTGTTCGGAGATGGAAAAAATATTGCTGGAAAATTGATGGCATTTGCTAATGTACAGGTGCAAGAAGGAGATGGATTACCCACAATCATCTGCTTCAATTGCCATCATCTTATCGATGTATCATTCGATTTTAAATGTCAAGTAGAGGAATCGGATTCAAAATTAAGACAAGCTTTGTTATCTAAAGATCCAACATTATCACTAACACATTCGATTAACAAAGTCATAAAAGAAGCTATATCGGAAGAATTCTCACAGCAAGGAATTCCTTGCAATGTCGAACATCACAGTCAACCTCTCAGTGATATTAGCACAAAGAAAATTGATCATTTTGCCATTCAACCAAATGAAGAACTGACTTTAGCACCTCTAAGTAATGTGGAAAACATTATGACATTTGACATTAGTGGTAGTTGTGATCAAAGAAACCAAAGTACAAGTGAAGTGAAAGAAAGTAATTATTACAGGAATAATGACAAACAAGAGATTTTAGAACCATTTAAGGAAGAGCAATTGACTAGAGTTATTCAAAATATTCCGGAAACACAAGGTAACATGAATGCTTCCTTCGAAGAGGAATATGTTAAATTGGAAGAAAGTGAAAGTAGTTTGCAATTAACTGCTGATAATATAAAAAAAACATCGACGTTATCAAAGAATACTGGAAGTACTGCAGAGAATACTGATGAAACTGATGAAGAGGAAATACCTTTAATACGTAGAACCCAAAGACAAAACTGTTCTCAGTGTGTAAAAACTTTCGCCACCAAGCAAGCTTTGGATAGGCACATGACTATGCACAAACAAAAGACGAAACTTCGTTATGTTTGTTACATGTGTGATAAGCAATTTGCAACTGTGGAGAAACTGAAAAGTCACTTACAAAGTAGTCATGAAAAAGATAAAGTGAAATCATCAAAATATGCAGAAAATGCCAAAAGAACTGATAGATCTGACAAAAACAGCAATTCTACAGAAAAGAGATCCTTCAAATTTACTTGCAAAGTTTGTTCCAAACAATTCACATACCAGAAATCTTTTATAACGCATGCTAAAATTCATAGCGAGTGCGATTTGGAAGATATAGTCAGCGAGTACTTGCCACCTAAACGTTCGGAGAGTCCACCTAAAATTAAAGAGCCTGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAATCCTTGCGGATGGTTTACAGTGTACAAAATGTGGTAAACTGTTTGCAACAAAGAGAAATCTTAAGCGACATATTTTAACTCACACTGGTTTGAAGTACAACTGCCCCATGTGTGGAAAAGAATTTTCAAGAGTAGACAAAATGAAAGAACACGAACAGGCGAAACATAAAATAGAGTTATTTAGCCAATTTTCTGACAATGATGATGATGACGAGGGTACGGATAATGAGAATAAGGCCGACTCTGCTGAAAATCGCAAAAAGGAGAAGTACAACAGACCACATCAATGCACTATTTGCCCAAAAGCTTTCGCGCAACCGCAATCTTTAGCCAACCACATGGAACGTCACAAACGCGTCAAAGATACTCAGAAGCGATTCCTGTGCGAAGTTTGTAGTAAATGCTTCGCTCAAAGTGGTTCTCTTGTCGCACACATGCGTACTCATACGGGTGTTAAACCTTACGTTTGCAACGTTTGTACTAAGGCATTTACCAAAAGCACTTACTTACAATTGCATTTGCGAACCCACAGTGGAGAAAAACCGTATATTTGCCAGTACTGTAGTAGAGCGTTCGCGCGAGCCAATACTTTGGCTAGACATATAACGATGCACACAGGGGAAGCGAAATATCATTGTCAGATATGTAATAAGTCTTTCAGACGCTTGACTTCCCTTAATGAACACACCTATACTCACACCGGTCAGAGGCCTTACGCGTGTAAGATATGTGCAAAAAGATACAATAATGCAGGTTCTTTATACGCTCATACAAAAAAGTGCAAATCTCAACAACAATCCAGTGGTGTACCAACATACACAATCAATACCGAGTCGACGGATAACAACATTCAGAATAATGCAGGACCTCCAATGCTTATATATTCTCAGAAAAAATTAGTAGAAAACACACCAGTCGGTCAAATAACGCCTACACCTCAATTTATGGTTGCCAATGTTCACAGTCAGAAACCTCTTACCACTAATATAATTCAACCTTTCACAATTGAAGATCCGAATCTTTACGCGGTGAATGCAAAGCAGTTCAAAAATTCGTATTACGCAATATATCCGAATATGTAA
- Protein Sequence
- MEVEDCKNSIENIRATEHNSDKQCRICLKSSTSHWDLFGDGKNIAGKLMAFANVQVQEGDGLPTIICFNCHHLIDVSFDFKCQVEESDSKLRQALLSKDPTLSLTHSINKVIKEAISEEFSQQGIPCNVEHHSQPLSDISTKKIDHFAIQPNEELTLAPLSNVENIMTFDISGSCDQRNQSTSEVKESNYYRNNDKQEILEPFKEEQLTRVIQNIPETQGNMNASFEEEYVKLEESESSLQLTADNIKKTSTLSKNTGSTAENTDETDEEEIPLIRRTQRQNCSQCVKTFATKQALDRHMTMHKQKTKLRYVCYMCDKQFATVEKLKSHLQSSHEKDKVKSSKYAENAKRTDRSDKNSNSTEKRSFKFTCKVCSKQFTYQKSFITHAKIHSECDLEDIVSEYLPPKRSESPPKIKEPEEEEEEEEEEEILADGLQCTKCGKLFATKRNLKRHILTHTGLKYNCPMCGKEFSRVDKMKEHEQAKHKIELFSQFSDNDDDDEGTDNENKADSAENRKKEKYNRPHQCTICPKAFAQPQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCTKAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICNKSFRRLTSLNEHTYTHTGQRPYACKICAKRYNNAGSLYAHTKKCKSQQQSSGVPTYTINTESTDNNIQNNAGPPMLIYSQKKLVENTPVGQITPTPQFMVANVHSQKPLTTNIIQPFTIEDPNLYAVNAKQFKNSYYAIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392203;
- 90% Identity
- iTF_01391399;
- 80% Identity
- -