Sgif020808.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000046.1:4099085-4108502[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.12 17 6.9 0.4 2 23 205 227 204 227 0.91 2 34 0.16 22 6.5 1.4 1 23 239 262 239 262 0.95 3 34 0.07 9.7 7.7 3.2 1 23 275 298 275 298 0.93 4 34 0.0015 0.21 12.9 5.9 1 23 304 326 304 327 0.95 5 34 0.0051 0.7 11.2 0.5 2 23 333 355 332 355 0.95 6 34 0.042 5.8 8.4 2.4 1 23 360 383 360 383 0.95 7 34 2.5e-06 0.00034 21.7 0.4 3 23 391 411 389 411 0.96 8 34 1.2e-05 0.0016 19.6 1.4 1 23 417 439 417 439 0.97 9 34 0.00031 0.043 15.1 1.0 1 23 445 467 445 467 0.97 10 34 0.00083 0.11 13.7 0.4 2 23 630 652 629 652 0.94 11 34 0.0036 0.5 11.7 2.4 1 23 658 681 658 681 0.96 12 34 7.6e-05 0.011 17.0 0.4 3 23 688 709 686 709 0.96 13 34 0.00023 0.031 15.5 1.7 1 23 714 736 714 736 0.95 14 34 0.039 5.4 8.5 2.6 1 23 742 764 742 764 0.98 15 34 1.9e-07 2.6e-05 25.2 2.2 1 23 770 792 770 792 0.98 16 34 0.0034 0.47 11.8 0.2 1 20 849 868 849 870 0.95 17 34 2.2 3.1e+02 2.9 10.1 1 23 873 896 873 896 0.95 18 34 2.3 3.2e+02 2.9 0.7 1 23 901 924 901 924 0.84 19 34 9.5e-05 0.013 16.7 1.7 1 23 930 953 930 953 0.98 20 34 0.81 1.1e+02 4.3 6.0 2 23 959 981 958 982 0.93 21 34 0.00092 0.13 13.6 1.4 1 23 986 1008 986 1008 0.97 22 34 3.1e-06 0.00044 21.3 3.8 1 23 1014 1036 1014 1036 0.98 23 34 0.0015 0.21 12.9 1.3 1 23 1042 1064 1042 1064 0.98 24 34 0.00014 0.02 16.1 1.6 1 23 1070 1092 1070 1092 0.97 25 34 0.00025 0.034 15.4 0.9 1 23 1237 1260 1237 1260 0.98 26 34 0.11 15 7.1 2.9 1 23 1329 1352 1329 1352 0.91 27 34 0.81 1.1e+02 4.3 0.0 2 21 1427 1446 1427 1447 0.93 28 34 0.0016 0.23 12.8 3.2 1 23 1585 1608 1585 1608 0.97 29 34 0.11 15 7.1 1.8 2 23 1615 1636 1614 1636 0.95 30 34 0.0013 0.17 13.2 0.5 1 20 1641 1660 1641 1662 0.94 31 34 0.012 1.7 10.1 2.3 1 23 1669 1692 1669 1692 0.97 32 34 0.0014 0.19 13.0 0.8 1 23 1696 1719 1696 1719 0.97 33 34 0.00063 0.087 14.1 0.2 1 23 1724 1746 1724 1746 0.97 34 34 0.0019 0.27 12.6 0.7 1 23 1752 1774 1752 1774 0.98
Sequence Information
- Coding Sequence
- ATGGATGATAACCGAGGGATATTTTTCTTTGGCAAAGAATCCGTAATGATGCGAAAGTGGCAGATTTTGGAGTTTGATGATAAGCCATATTATGCCTTCATACCTGAAAACGAGAACCCTTTGGAAGAAGTTATGATACCTGAATATCTAGAGACCCAAGAAGACAAAGGAACAAGTGATTATGTTAAACACTTGGTTAAATCTGAACCTATCTTTGAAGTATCTGATAATTGCTCAAACAACGAACAGGAAGTGGATTACAATAGTGAAGAACTAGAATCAGCAGAAACAGTAGAATATATTGAACTAGGGAATATAAAGCCCATCAAAAATGATTCAAACAAAGAAAACGAAGGAGGCGATGCTTTTGTATATCAGATGAAGGTAGATGGAAGAATGGTGACTATCGAGAAACGTACAGAGAATCTCTTAGACTCGAATTCATTTCAACAGGAATCTGGAAATGAATTAGAAAATGATATAGAATATCTTGACAATGAAGAGGAGGAACTTTGCGACTCCATTTTACAAGAGAATGGATCTTCAGTATTAAAAGTAAACAATTTGCCAAAATCTCCCCAAGAAATCGAGAGCTTTTCTTCAAGCGTCTTGAAGTGCAAGGCATGTTCCGAAACTTTTGAATCCAACTTAGCTTTCAGGAAACATGTGGCATGGACCCACAAAAAGAGGGTCTGTATTCAAGAAAACGGGGCTTACATCTGTTCAGTCTGCGATTATCAGACTTTTAAGAAAAATTCATTCGCAAACCATTTGGAAAGAAGACACGAGACCTGGACAACAAAAATACCCAATAGCCTCTTTTTCCCTTGCGCTGCTTGTGGGTTTGTTTGCAGTTCGAAACACTCGTTACAATCCCATTTTATTCGGAAACACACCGACAAGTTTGAACATCAGTGCAAGTTTTGTGAAAAACAGTTCAAGGTCAAAGGAGACCTTACAAATCACGTCAGATTCCATCACAAAGAGAAGCCTATAAGTTGTGATGTTTGTGGAAAGATGTGTCAGAATACTGGATCCCTCTATGTACATCAGAAATGGGCACACTATAAACCAAAGTTCGAATGCCACCTTTGTCATAGGCGAATGGTTACGCAGGAAAATCTAGATCAACATTTGGTCATGCAGCACGAAAAAAGAGAAAAAATAATCTGTGCTCTGTGTGGAAAAAGCTTCACGAAAAAGGATTCCTTTAAAAGACACATGGCTGTGCATACCGGAAACAAACCACACTCTTGTATGATATGTCCTAAAAATTTTGCTCGCAGATCCCAGCTGAGACAACACTTGCTTATACACACAGGAAAGAAATTTTTCACCTGTGATATTTGTGGCAAAGGTTTTAGTCAAAAGCCCGGGTTAATTTGTCATCGGAAAATACATCCTGGAAATCATCCTCCTCTACCAGTCATGCCGATTGCAGACCTGGTTAAAGAGTTCACAGAAGAACATAGTACTGTAGCCAACGAAGATGATCAGGAAGTAGAAGATGATCCAGATTTTATAGATGAGGTAGAAATTCTTGAGGAACATGAGGTTCTGGAAGGAAAAGAGGGTCTTCAAGATGAAGAGATTCTTCAAGGCGAAGAAATTATTCAGGGAGAAGAAATTCTTGAGGATCAAGAATTTTTAGACGGTCAGGAAGTCTTTTATGAACAAGTGATTAATGATGATCAACAGTTTGAAGGCGTGCAAAAGTATCACGTCGATCAACAATTTCTTGATTCACAGTTTAATGGTGATCTCGATATGAAAAAATCTAATGATCCTATTACGGAAGATGCGAATAAGCACCACAAAAGAAAAAGTCGCAAGAGAAAAATACGAAAAGAAGAATCGGACAAACTCAGATTAAGTTCTCATAAATGGGTTTGTGCATTTTGCACACAAGTTTTCAAATACAGTGCAAACTTATCAAGGCACTACATCAGGAATCACACTAAGGATGCAAATTTCGCTTGTAAATCGTGCGATAGAAAATTTTATCTAAAAGCTGACCTCTCCAGACACTTTCGCTCCAAGCATGATGATAAAGAGGTCATATGTAAATTATGTGATAAAACTTTTCGAAATGAATTTTCTTTGGGGGACCACATTAGAAGAATACACAATTTGAGACAGTTCTTATGTGAAATTTGCAAAAAGAAATTTCAAACCAAATATATGATTAAACGCCATATGGAGATTCACGTTCGTGATAGGTCCTACACTTGCGACATTTGCAAAAAGAAACTTGCAACGAAATATTCGATTGAATGTCACATGAAGATTCACGATACCGTTAAACCCTTCACTTGTGATGTGTGTGACAAAACTTTCAGAAGGAAAACTGACCTCAAAAGACATCTAATAAGACATATAAAGAGTGAAATACTCTACATCAAGATCGAACCTGGATCCATTCTGCTGCCTGTGAAACGAAGGATCAGTAAGTCTCTAGAGACTAATAACAACAATGCAAAAAATATCAACAATCCATCTAAAAATGATAATGAAATAGACAAAATCATTCATGATCTCGAGAAATACATCTGCGATTTTTGCAATGTGAGTTTCAATTCGAAACGAGATCTCGCTCTACACATCACGCAAAGTAAATTCTCATGTGAAATCTGCAGTCATCACTTTGAGTACATGCATCAATTAAAACACCATTATACTTCGAAGCATGGATCAGAGACGTTCCCGTGTTCGATGTGCAACTACGTAAGCAAATCTGTGGCTTCGTTACAATTTCATTTTATTAGGAAACACATGGATGGAAGTTATTATTACTGTGAACTCTGTTCGAAACAATTCAAACTTAAAAATGATCTCAATACTCATATGAATCGGGTTCACAGTGGAATTGCCTGTACTTGTGAGATATGTGGTCACCAAAGTATCAGTCTTCACGCCCTGAAGAGCCACTTGAAATTTGTTCATCATAAATCTCAGTACCAATGTAAACTTTGCCACCGTTCTATGACCACTCAAGAGAATCTTGATCAACATATAATCTGGCACCAAACGAGGGCACTACATGAATGTACGACTTGTGGAAAACAGTTTAAACAAAAGCAAACTTTAATTAAACACATGAAAATTCATACTGGAGAGAGACCATACGAATGTGTTGTTTGTAATAATACTTTTTCCAGACATACTGCATATGAGCAACATGTACTGACTCACATGAATAGAAAAATGTACTCGTGTACCGTTTGTGGAAAAGATTTTACCCAAAAGTCGGGACTTATTTTTCACAGAAAGAAACATACTGGTCCTCTTCCACTATTACCTGTTGTTTCTGTTCGAAAAGTAGTCCAGGAATTTATTGAAAAATTTTTAAGTACGAGGTCGACGATTAGTTCAGAAAATGTTTCATGCCATCTTAGAGCAAACAAAGACTTTTTTCTAACTTACACATATTTTTGCGCTAGAATATACATAGAATTGGAATGCAAAAACAAAACGTCAAGCCAAACATCAGGAGACCCTTTATTTATTCCTCGGCCTAATTGCAAAGCAGCTAACGAATTTCCAAGTAGTGTCTCATCGATTAAATCAGAAAACCCAAGTGGACCGATTCCAAATAACGTCAAAGGGCCGCCTCGACCATTATATTTATGTGAGCACTGTGAGTTCACAAATTCTGACAAAGAGATTACAGAAAGTCACATCAAACAATCTCATAATCTCCAGCAAGATTATACTTGTAAAGATTGTGACAAATGGTATAAATCTTATGATCTTTTAAGAGAACACATAAAACGAGTTCATAGAAAATTACCATACATTTGTGGTGCATGTGATTTTAAAGCCAAGGAATATGGGAATTCTCGTATTATGTGGTTCCACATGAGGGCTAGACACGTAAGCATCACTGGTGAAAGTAATATTCCCTTAACTTGTAAAATTTGTAGATTTAAAAGCACCAATCATGGCATGTGGGATCATATGGAAAATAATCACATGAAAACTTATTATCATTGTGGAATTTGCAAGTATTACTTTAGCTCGCAATTAAAACTTCGATTGCATAAAGCCGAGAAACATTCCAAGAAACTTTCATCAGAAAAAAAAATCAAGAAGAAAGGCAATAATTTCATATCAATTGCACCTAAAATAGCTGGTCTTGAGTATCCTCCTACGCCTCCATTGCATCCAATTATACCAATTATTAGTCGTTCGATAGTGTCTACGATTCCTCCTATTCCATTTAAATTTCCCTCAACAAAAAGTACCCGTTCAAAATATAGCCGTTTTTTAAAAAATCGAGTATGCCTCGTTTGTGGCGTTGGCTATGACGTAGATTCTAATTTACATCAACACCTGCAAAAGTTGCAAGAAGATGTCGATGCTAGTGTGGCTCCAACGTACATTAATGTCTCATTGGAAACACCAAGATACATTGTTAGGCAAAATAATGATAATTTCACGATTGCCTGCAATTGGACAATTGGAAAGACTTCTGCTGAAAACATCGAATTTAATATCGAATGTAAGGAAGAACGGCTAGATAGAGAGAGTGAAGACGAAGATAAACTAATGGAAGAGGCAAATTTAGTCAACCCTGTATCAGATCAAGGAAACAATTCCCTGAAGAATGAAGAAAACAATTTAGACATGTACGAAAGAAATCAAGCTGCGTTCTACAATTCAACTGATAACTCACACAATGAGAGCACTCCGATCGCTGATTGTCCACCTCTTCCTCTTGAATGTGTTTTAGTTGATGAAAAGCAGACAATTTTTCCGTGTGAACTGTGTCAAAAGATTTTTAAATATAAAAGAGGTGTGCGGGAACATATGAAACGTTGTCATACCCAAGCTGCAACTGTAGAATGTTACATTTGCGGAGCTAAATGCAGCAATTTTTATTTGACTCGTCATATAAAAAATCGGCACACGAAACCTGCCTTTGAGTGCAAAAAGTGTGGCAAAGGCTTCGACAAAAAAGAAAGATTAAATATCCACAAGGGTACCAAGTGCAAGAAATATGGTTTTAAGTGCAAAAAGTGTGGCCAAATTTTCGAGAAAAAATATATTCTTGATACCCACACACGTAGTACGCACAGAAAAAGGTATAATTGCCTTTTCTGCAAGAAAGCTTTTGCAGACACTGCGAAAGTAAGGTCTCATATGAGAATCTATCATGATTTGAGACCTTTTCCTTGTCCCGCTTGTAATAGGCCTTTTACGACTAAACAAGCAATGAATCAACATTTACTCTTGCATACAGGAACACGTCCTTATGTTTGTGATATCTGTGGAGACACCTATATTCAGAAATCTAATCTCACCTTTCATAGAAAGAGCCATCCTGGACCACTTCCCCCGATGCCACCTACATCTGTAGCTCATATTGTGGATAAATTTACTCAGATGTTGGAATTTAAACATTACAGAGAGGGAAAGGGTAAAAAGAAAAAGGATAATAAGAGGAAGATTCATGATGAAGGTCTAAGTTCAAAGAGAAGTGAAACAGAACAAATTAAGGAAGAAATTTAA
- Protein Sequence
- MDDNRGIFFFGKESVMMRKWQILEFDDKPYYAFIPENENPLEEVMIPEYLETQEDKGTSDYVKHLVKSEPIFEVSDNCSNNEQEVDYNSEELESAETVEYIELGNIKPIKNDSNKENEGGDAFVYQMKVDGRMVTIEKRTENLLDSNSFQQESGNELENDIEYLDNEEEELCDSILQENGSSVLKVNNLPKSPQEIESFSSSVLKCKACSETFESNLAFRKHVAWTHKKRVCIQENGAYICSVCDYQTFKKNSFANHLERRHETWTTKIPNSLFFPCAACGFVCSSKHSLQSHFIRKHTDKFEHQCKFCEKQFKVKGDLTNHVRFHHKEKPISCDVCGKMCQNTGSLYVHQKWAHYKPKFECHLCHRRMVTQENLDQHLVMQHEKREKIICALCGKSFTKKDSFKRHMAVHTGNKPHSCMICPKNFARRSQLRQHLLIHTGKKFFTCDICGKGFSQKPGLICHRKIHPGNHPPLPVMPIADLVKEFTEEHSTVANEDDQEVEDDPDFIDEVEILEEHEVLEGKEGLQDEEILQGEEIIQGEEILEDQEFLDGQEVFYEQVINDDQQFEGVQKYHVDQQFLDSQFNGDLDMKKSNDPITEDANKHHKRKSRKRKIRKEESDKLRLSSHKWVCAFCTQVFKYSANLSRHYIRNHTKDANFACKSCDRKFYLKADLSRHFRSKHDDKEVICKLCDKTFRNEFSLGDHIRRIHNLRQFLCEICKKKFQTKYMIKRHMEIHVRDRSYTCDICKKKLATKYSIECHMKIHDTVKPFTCDVCDKTFRRKTDLKRHLIRHIKSEILYIKIEPGSILLPVKRRISKSLETNNNNAKNINNPSKNDNEIDKIIHDLEKYICDFCNVSFNSKRDLALHITQSKFSCEICSHHFEYMHQLKHHYTSKHGSETFPCSMCNYVSKSVASLQFHFIRKHMDGSYYYCELCSKQFKLKNDLNTHMNRVHSGIACTCEICGHQSISLHALKSHLKFVHHKSQYQCKLCHRSMTTQENLDQHIIWHQTRALHECTTCGKQFKQKQTLIKHMKIHTGERPYECVVCNNTFSRHTAYEQHVLTHMNRKMYSCTVCGKDFTQKSGLIFHRKKHTGPLPLLPVVSVRKVVQEFIEKFLSTRSTISSENVSCHLRANKDFFLTYTYFCARIYIELECKNKTSSQTSGDPLFIPRPNCKAANEFPSSVSSIKSENPSGPIPNNVKGPPRPLYLCEHCEFTNSDKEITESHIKQSHNLQQDYTCKDCDKWYKSYDLLREHIKRVHRKLPYICGACDFKAKEYGNSRIMWFHMRARHVSITGESNIPLTCKICRFKSTNHGMWDHMENNHMKTYYHCGICKYYFSSQLKLRLHKAEKHSKKLSSEKKIKKKGNNFISIAPKIAGLEYPPTPPLHPIIPIISRSIVSTIPPIPFKFPSTKSTRSKYSRFLKNRVCLVCGVGYDVDSNLHQHLQKLQEDVDASVAPTYINVSLETPRYIVRQNNDNFTIACNWTIGKTSAENIEFNIECKEERLDRESEDEDKLMEEANLVNPVSDQGNNSLKNEENNLDMYERNQAAFYNSTDNSHNESTPIADCPPLPLECVLVDEKQTIFPCELCQKIFKYKRGVREHMKRCHTQAATVECYICGAKCSNFYLTRHIKNRHTKPAFECKKCGKGFDKKERLNIHKGTKCKKYGFKCKKCGQIFEKKYILDTHTRSTHRKRYNCLFCKKAFADTAKVRSHMRIYHDLRPFPCPACNRPFTTKQAMNQHLLLHTGTRPYVCDICGDTYIQKSNLTFHRKSHPGPLPPMPPTSVAHIVDKFTQMLEFKHYREGKGKKKKDNKRKIHDEGLSSKRSETEQIKEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -