Sgif000723.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus gifuensis
Gene Symbol
-
Assembly
GCA_904066015.1
Location
CAJFCO010000118.1:502886-505165[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.6e-06 0.00091 20.3 0.6 2 23 237 258 236 258 0.97
2 16 3e-06 0.00041 21.4 2.2 1 23 264 286 264 286 0.99
3 16 1.7e-05 0.0023 19.0 1.2 1 23 291 313 291 313 0.98
4 16 0.00067 0.093 14.0 0.3 2 23 324 346 323 346 0.94
5 16 2.3e-07 3.2e-05 24.9 0.5 1 23 352 374 352 374 0.99
6 16 1.6e-06 0.00022 22.3 0.5 1 23 380 402 380 402 0.98
7 16 1.3e-05 0.0018 19.4 1.0 1 23 417 439 417 440 0.96
8 16 1.1e-06 0.00015 22.8 3.7 1 23 446 468 446 468 0.99
9 16 3.3e-05 0.0046 18.1 1.6 1 23 473 495 473 495 0.97
10 16 2.1e-05 0.0029 18.8 1.1 2 23 513 535 512 535 0.95
11 16 2.4e-05 0.0034 18.6 1.3 1 23 541 563 541 563 0.99
12 16 0.00011 0.015 16.5 2.1 1 23 568 590 568 590 0.97
13 16 6.2e-06 0.00086 20.4 0.3 2 23 593 614 592 614 0.98
14 16 0.00015 0.021 16.0 0.2 1 23 620 642 620 642 0.96
15 16 0.00029 0.04 15.2 1.2 1 23 649 671 649 671 0.97
16 16 4.3e-06 0.0006 20.9 1.8 1 23 676 699 676 699 0.95

Sequence Information

Coding Sequence
ATGCAGAGTAATCAAGCTATGAAGATTAATCAATCCACAGAGTCTGAACAATTTATGGCGTGTGATCAACTTATCAAGAGTGAACCACTTACGGAGTATGAACAACCTGCGAAGAATGATGATCAATCCACGAAAAGTGACCTGCCCACAGAGAGTGATCAACCTATCAAGATTAATCAATCTGCGGAGTCTGAACAGTCTACGATATGTGATCAACCTAGGAAGCGTGGTCGACCTAAAAAGTGTGATCAATCTAAGAGGATTGATCAATCTAAAAAGATTAATCAATCTAAGAAGATTGATCAACCTGAGAAGTGTGCTCAATCTAAAATAATTGATCAACCCAAGAAGATTAATCAATCCACGGAGTCTGAAAAGTCTACGATATGTGATCAACATAAGAAACGTGGTCGTCCTAAGAAGCGTGGTCAATCTAAGAAGCTTGGTCAACCTAAGAAGATTGATCAACTTCAGAAGTGTGATCAACTTCAGAAGTATGACCAACCTAAGAAGATGGATCAATTTAAGAAGGTGGATCAACCTAAGAAGAGTAATCAATCTGGCAAGTGTGATCAACCCAAAAAAATCGATCAACCCATCAAGTGTGCTCGGCCTAAAAATATTGATCAACATACAAATAGTGATCAATCCACGAAGAGTGATGAACTTCCAAAGAGTGAAGTACATACGAAAAAGGAACTACCCACGACTTGTGAAATTTGCGCAAAAAGTTTTACAAAGCGTTCTTATTTAATGATTCATATGATAAGTCACTCAGAGCACAAACCGTTTAAATGTGATTTATGTTCAAAGACTTTTCCTAGAAAATGGTGTTTAACAGCACACATAAAAGTTCACGAAGACAGAACTTTCGTGTGTGAGATTTGTTCCAAAAGTTTTCGGAGAAAGGACATCCTAGAGAAACACAAGAAAGTACATGAAAAACCCATAAAGGGTGATGCACATACGCAGTGTAAAATTTGTGGAGTTTATTCTTCGTCACGTGATACTTTAAGGACTCATATGGTGGTAAATCACTCAGAATTAAAACCATTTCAATGTCAAACTTGTGAGAAGAGTTTCCCTAGAAAATGGGCTTTAACAGCACACATGAAAATTCACGAGGACAAAAAGCCTTTTGTTTGTGATGTTTGTTCTAAAGGTTTTAGGAGAAAGGCTACTTTAAGCGACCACATGAAGGTCCACCTGGTCAAACCTAAGATTTCTAATCAGTCTAAGAATGATCAATTCAAGTGTGAAATTTGTGGAAAAGCTTATCCGTCACGTCATGGATTATGGGTTCATACGATAAGTCATCACACCGACGATAAATCCTTTAAATGTAAATTTTGTTCAAAGAGTTATTCTAGAAAATGGCTGTTAACGTCGCATATGAGAATGCACCAAAAAAAGGCTTTTTCGTGTGATATTTGCCCGAAAACTTTTCGGAAAAAGGACTATTTAGACTTACACAAGAAGTTACACAGGGAAAAACGCACAAAATGGGATCAACTTGCAAAGACTGATCCACTTACGAAGTGTAAAATTTGCGGAACATATTATGCGACTCGTAGTAATTTAAAGACTCATACAATAATGTATCACTCAGATGTTAAACCCTTCAAATGTAAACTTTGTTCGAATAGTTATTCTAGAAAATGGGGATTAGTGTCACACATGAGAATGCACCAAGAAAAGGCTTTTGCATGTGACATTTGTTCCAAACGTTATAGAAGAAAGTGCGCTCTGGACTTGCACATGAAGGTACACAGGGACAAGTGTGAAATCTGCGACAAAATATTTCTGGATTCAAGTAGCCTTAAATTACATATGCGTATTCATAAAGTTGAAACGGTTTTCGAATGTGATGTCTGTAAGAAAACTTTCAAAACCAGAGAGAGCATTGTAGATCACGTAGCTATTCATTTGGAAAAAGCCCCTTCATTTTCTTGTCGAGTGTGTAAAGAAACTTACAAGTCAGTCAACTCTTTAAATACTCATATGAAAGCTCACGCGATTCCTAAGTTCGAATGTAACATTTGCAAAAAGTCTTACTTTAGAAAAAGTGATTTAATGACACATATGTACAATATTCACGTAGAAATTCATTCTCCAGTGTTGAACTGTGATTTAGTTCAAGAGGAGTTGAATTCTGAAAAAATTTCTGAAAGTCGTGGCTTTAATAAGTTTCCTCTGAATGAGGAAATTCGTTATCCATTAGATACAAGTGATATAGAAATTGAAGACATAAAGATAGAACTTAAAATTGAGGATTATTGA
Protein Sequence
MQSNQAMKINQSTESEQFMACDQLIKSEPLTEYEQPAKNDDQSTKSDLPTESDQPIKINQSAESEQSTICDQPRKRGRPKKCDQSKRIDQSKKINQSKKIDQPEKCAQSKIIDQPKKINQSTESEKSTICDQHKKRGRPKKRGQSKKLGQPKKIDQLQKCDQLQKYDQPKKMDQFKKVDQPKKSNQSGKCDQPKKIDQPIKCARPKNIDQHTNSDQSTKSDELPKSEVHTKKELPTTCEICAKSFTKRSYLMIHMISHSEHKPFKCDLCSKTFPRKWCLTAHIKVHEDRTFVCEICSKSFRRKDILEKHKKVHEKPIKGDAHTQCKICGVYSSSRDTLRTHMVVNHSELKPFQCQTCEKSFPRKWALTAHMKIHEDKKPFVCDVCSKGFRRKATLSDHMKVHLVKPKISNQSKNDQFKCEICGKAYPSRHGLWVHTISHHTDDKSFKCKFCSKSYSRKWLLTSHMRMHQKKAFSCDICPKTFRKKDYLDLHKKLHREKRTKWDQLAKTDPLTKCKICGTYYATRSNLKTHTIMYHSDVKPFKCKLCSNSYSRKWGLVSHMRMHQEKAFACDICSKRYRRKCALDLHMKVHRDKCEICDKIFLDSSSLKLHMRIHKVETVFECDVCKKTFKTRESIVDHVAIHLEKAPSFSCRVCKETYKSVNSLNTHMKAHAIPKFECNICKKSYFRKSDLMTHMYNIHVEIHSPVLNCDLVQEELNSEKISESRGFNKFPLNEEIRYPLDTSDIEIEDIKIELKIEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-