Sgif021078.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000046.1:5996620-6000708[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00052 0.072 14.4 0.4 1 23 69 91 69 91 0.98 2 22 0.00018 0.025 15.8 4.4 1 23 132 154 132 154 0.98 3 22 1.4e-06 0.00019 22.5 2.4 1 23 160 182 160 182 0.99 4 22 8.5e-06 0.0012 20.0 4.3 1 23 188 210 188 210 0.98 5 22 2e-05 0.0028 18.8 1.2 1 23 217 239 217 239 0.98 6 22 3.9e-05 0.0054 17.9 2.5 1 23 245 267 245 267 0.97 7 22 2.1e-05 0.003 18.7 1.2 1 23 272 294 272 294 0.98 8 22 3.7e-07 5.1e-05 24.3 2.3 1 23 300 322 300 322 0.99 9 22 1.7e-05 0.0023 19.1 1.2 1 23 328 351 328 351 0.95 10 22 7.2e-05 0.01 17.1 1.0 1 23 490 512 490 512 0.98 11 22 5.7e-06 0.0008 20.5 2.9 1 23 526 548 526 548 0.98 12 22 0.093 13 7.3 2.9 1 23 556 578 556 578 0.93 13 22 1.9e-06 0.00026 22.0 0.7 1 23 585 607 585 607 0.98 14 22 0.053 7.4 8.0 5.1 1 23 618 640 618 640 0.97 15 22 4.6e-06 0.00063 20.8 1.5 1 23 646 668 646 668 0.97 16 22 0.00085 0.12 13.7 1.9 1 23 674 696 674 696 0.97 17 22 0.00016 0.023 15.9 0.6 1 23 703 725 703 725 0.97 18 22 0.00044 0.061 14.6 1.2 1 23 734 756 734 756 0.97 19 22 0.13 18 6.8 0.3 7 23 768 784 768 784 0.97 20 22 0.013 1.8 10.0 1.1 2 23 805 826 804 826 0.91 21 22 0.00091 0.13 13.6 0.1 2 23 834 855 833 855 0.97 22 22 0.00019 0.026 15.8 2.2 1 23 867 889 867 889 0.97
Sequence Information
- Coding Sequence
- ATGGATTTCGAAAATAATATTAAGTTAAAGTTTTTATCAAAAGACCTGCAAGAAGTCATAATAAAATCTGAGTCGCCCGATTATGATTCAAATGAAGAAACCTGCTTTACAGAAGCCCAATGTGAGATGATAAATCTAATTAATGAAGATAAAAATGTAGTTTCAGAAAATGAAAAACGTAATACTATAAAACTTGAAAATTTTTACCGGTGTTATGAGTGTCAACAAGAATTTCAAACCCTGGAAAGCCTAAAGGACCACATTGATATTCACTATGTAAGTAATTTTGTACTACCTCGTGTGAAAGGTGCAAATATTTCTTCAAAACCCCACGATTTACAGATTCGTATGCCAAACGACTCACAAGATAAATCCCCACAAACAAAAAAACCTTTTGTTTGTAATGTTTGCTTTAGATCTTATGTATCGAAGTATTATCTGAAACATCATAGAAAGATCCACTTGGATGAAGGTGACTACAAATGTGACACTTGTAAGAAAATATTTAAATCGGAATATTCTCTTAAAAATCATTTACGGGTTCATACTACAGAAAAGCCTTACGAATGTAATATTTGTAAGAAATCATTCAAATACCAGCATACTCTAAAGTTGCATGTACAGTCTCATATGGAAGGTGGTAGACCCCACAAGTGTTCTATTTGTTCAATGGCTTTCACAAAACCCCAGTACTTGAAGGTTCATATGTTGATTCACTCAGGAATTAAAAACTTCAAATGTGATATTTGCAAGCAGGCATTTATAAGAAAGGATTGTTTAAAATCGCATTTGCTCCTCCATCAAAACAGATCTTTTGTTTGTGATGTTTGCAATAAAACCTTCGTGAAAATGTCGTATCTAAAAGAGCATAAGAAGATACACTCTGATAAAAAGCCTTATGTTTGCAAAACGTGTGGAAAAAGATTTATTTATGCGTTTTATTTAAAAACTCACATGCGAACTCACACTGGAGAAAAACCGTATGATTGTGACATTTGTCAGCAAAAATTCAGCAGATCTTACACTTTGAGAAAGCATGAACTGAGGGCTCATACAAAAGGTAGAAAAAAAAGATCTTCAGAACGCAAAACTAAGAAGTCTTCAAATTACAAGAGAAATTTACGGCAAGTAGCTTGCAATAATGACTCAGATAATACTTCAAAGCATGCAAAAGAAAAATATGGATTACAAGATAAAGAAGGCCCGCCTTTGGTGAGCATCTTTATCAAGTCTGAACCTGACGAATATGAGTTTATCGACGAAGACAATTTTAGACAGAACAATAACTTTGTATCTAATAACGACAACAATGAGCTTTTAAAAAATGAAAAACCTATAATCAGATATGAAGAGTTCAAGTCAACCCACGCTGAAGCTTCTATAATCAATCACGTTGGTAAGCAAAACTCTTCAACGCATATTGAGATTAAAGATCAGGTATTTACTCCTACAGAAGATGAGGGACCACACAAATGTTCAGTTTGCGCAGAAGGTTTTTCGACACTACAAACTTTGAAGGTTCATATGCTCACCCACTCAAACAACAATATTTTAAAGAATATTAAACAAAAATCTTTCAAGTGTGACGTTTGTTTTAAAATGTTTACAACGAGGGCAAGTTTGAGGAAGCATAAAAAAATACATGAGAATATTCAACATACACCGTTTGAGTGCGACTTTTGTAAGCGAAAATTTGCTAGGCGTTTTAGGATTGAACAGCACATATTTTTTCATATTGGAGATGGTGGAGAGCACAAATGTGAATTATGTGGAATAGGATTTTCGACGCCCAAACTGTTGAACCGCCACCTGCGAGAACACTTGAATTATAAAAGTTTGTATTTTGAGCCCTTCCCATGTACATTTTGTCATCATCGTTTTCTCACAAGGAAAGAATTAACTCAACACTTGCTCGTCCACAGTAATATGAAACCTTTTTATTGTCAGAAATGTGGCCAAAGTTTTGAAAGACCATCACAACTGGAAATGCACAAAAAAAACCACTGTGAAGGAAAGATCTTTGAGTGCGACATTTGTAAGAGAAAATTTAAATCGCATTATTGGATTAGAGAGCACATAGTTTCTCACATCGGAGATGGCGGAGTTCACAAGTGTGAATTTTGTGGAGTAGGTTTTTCGATACCTAAGTTGTTAAAACGTCACGTGCGAGGACATTTGAGTTATAGAAATTATAAGCTCTTTGAATGTGAAATTTGTAAGCATCGCTTTTTAAGAGCGTATAATTTAGCACAACACATGCTCCTCCACAATAATGGTGATGCTTTTATTTGTGTCGAAAGCGGAAAAAGTTTTAAGGAAAAAGCATCATTAAACATGCATAAAAAAATACACCCTTCCAGTCGGCATGGAAATGAACAGACTTTCCTTTCACAACTACAAAATACTTCTTTAGAGTGTAACATTTGCAAGACAAAATTTAAAGATAGTTATAGATTGAAATTTCACATGGTGGCTCATATGGGAGATGGCGGACCTCTCAAGTGCTCAGTTTGTGCAAAAGGTTTCTCGATACCCTACGTTTTGAAAATTCACATGCGAGAGCACAAAAATAGAAAAAGCGATACTGTAGAAAAGTCTTTTGAGTGCGACGTTTGTAAGAAAAGATTTAAATTGGAGAAGAATTTAAAATCTCACAAAACGATTCATGTTAAGGATAAATCTAAAAAGAGTTCGAATGGAAGGATTATAAAAAAGCAGAAAGTTCTTGGCACTGTTAGTTTGAAATCTGAAATTATAAGTGAAGTTTTAGATAAAAATAATAGCAACGTAGAGAGTGAAGAAAACAATCTTATGACTGAAAGAGAAAAATTCTCTTTTATTTCTGTAAAAAAGGAACCTTGTGCTGTGTTTGATTTAAATTATGATTTGGACATCGAGGATATGAAGATTTCATTGAAAAGTGAAAGATAA
- Protein Sequence
- MDFENNIKLKFLSKDLQEVIIKSESPDYDSNEETCFTEAQCEMINLINEDKNVVSENEKRNTIKLENFYRCYECQQEFQTLESLKDHIDIHYVSNFVLPRVKGANISSKPHDLQIRMPNDSQDKSPQTKKPFVCNVCFRSYVSKYYLKHHRKIHLDEGDYKCDTCKKIFKSEYSLKNHLRVHTTEKPYECNICKKSFKYQHTLKLHVQSHMEGGRPHKCSICSMAFTKPQYLKVHMLIHSGIKNFKCDICKQAFIRKDCLKSHLLLHQNRSFVCDVCNKTFVKMSYLKEHKKIHSDKKPYVCKTCGKRFIYAFYLKTHMRTHTGEKPYDCDICQQKFSRSYTLRKHELRAHTKGRKKRSSERKTKKSSNYKRNLRQVACNNDSDNTSKHAKEKYGLQDKEGPPLVSIFIKSEPDEYEFIDEDNFRQNNNFVSNNDNNELLKNEKPIIRYEEFKSTHAEASIINHVGKQNSSTHIEIKDQVFTPTEDEGPHKCSVCAEGFSTLQTLKVHMLTHSNNNILKNIKQKSFKCDVCFKMFTTRASLRKHKKIHENIQHTPFECDFCKRKFARRFRIEQHIFFHIGDGGEHKCELCGIGFSTPKLLNRHLREHLNYKSLYFEPFPCTFCHHRFLTRKELTQHLLVHSNMKPFYCQKCGQSFERPSQLEMHKKNHCEGKIFECDICKRKFKSHYWIREHIVSHIGDGGVHKCEFCGVGFSIPKLLKRHVRGHLSYRNYKLFECEICKHRFLRAYNLAQHMLLHNNGDAFICVESGKSFKEKASLNMHKKIHPSSRHGNEQTFLSQLQNTSLECNICKTKFKDSYRLKFHMVAHMGDGGPLKCSVCAKGFSIPYVLKIHMREHKNRKSDTVEKSFECDVCKKRFKLEKNLKSHKTIHVKDKSKKSSNGRIIKKQKVLGTVSLKSEIISEVLDKNNSNVESEENNLMTEREKFSFISVKKEPCAVFDLNYDLDIEDMKISLKSER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -