Sgif030418.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010017954.1:2476-5574[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 8.9e-07 29.3 0.0 4 42 16 54 13 56 0.86 2 2 4.6 4.1e+03 -1.6 0.1 22 29 264 271 263 272 0.81
Sequence Information
- Coding Sequence
- ATGGGACGTAGCTTTAAACGCAAGACACCAGCGCGTGATCCTCTTGCTCTTCGACGTGCATTGGGAGCAATGATGCTTGGCATGTCTTGCAAAAGTGCTGCTCGTGAATACAACGTGCCACGCTCCACATTGCAAGATCATTGGAAAAAAAATAAAACAACCCACACGGACAGCGCAACGCCAATTGAAGTTGGCTTAAAAAGTTTGTATGTTGCAAAACATGGCCACAAGACGCTTTTTATGAAAGAACAAGAAGACGCCTTAGAAGAACATATGCTGCATTTATCGGACGTGTATTTTGGCTTGACCCCAAAGCAAGCTCGTTCATTGGTATTCGAGTTCGCTCAGAAACTACATATCGTTTATCCAAACGCTTGGGATGATCAAAAGTCAGCTGTATCGGCTGCAGGTTGTCGCGCCCCGTCGTTCTTCGTCTTTCCACGCGTTCGCTTCCATCAACATTTTCTCAACGGAAGTCCCATAGGTTGCGTTGGAGGTGCGAATCCATCTGGGTGGAGTAATGCTGAGCTCTTTTTGGAATTTTTGAAAAGATTCCAAAAATTCACAAGATACAGTGTGGTTGATCCTATTCTCCTCCTTCTGGATAACCATGAATCTCATCGCTCATTGTCAGCTCTCGAATACTGTCGCTCCAATGGAATCCATGTTGTTTCCTTCCCACCTCACTGTTCCCATCGACTTCAACCACTAGATGTCAGTATCTTTGGACCTTTCAAAGCCGCTTTAAGGGGGGAATTCGAGTCGTTCATGCGCATGCATCCTGGTCGCGCGATTCAGATTTATGATATTCCTTCCATGGTAGCCCGAGCGCTCGAACTCGGTGTCTCAGAAGTGAATATTAAATCGGGCTTTAAAGCAACGGGCATTTGGCCGATAGATCCTAATATCTTCGAAGATATCGACTTCTTGCCGAGCTCTACGACAGATCAACCACGTCCAGACAACAATGACATCCCTAACGTTGAAGCCATTCTAACAGATAAGGAGAACGAGAAAGCGATTCATGAAGATCTGATCAACTATTCTAACAAGTCCACCAGTTTGCCCTCGCTGTCTTCCTCCATGAGATCCGTAAGTGACACCTTAGAAAGTCTGTCACCTTTTCCAAAAATACCGCCGCGAAAAACGACGGGTACACGAGGCCGAAAGCCAGGCCGAACCACCATTTTAACAGTCGCTGCTGTTGTAGATAGCCGTATCGTTGTAGAAGAACAAAATCGTCAACGTCGCATTGAAGGAAAGAAATCACGAGGAAGACCTCGAAAGATCAAAACAAGACTAGAGACACGAACGAAAATACCAGAAAAACAACCACGACAAGAAAGTCAGTCTCCGCAACATTCCACGAGTGGATTTAACCTACATTCTCGTCAGCAACGAAGTTCAGTACGCCCTACATATTCTGAATCTGACGACAGTAGCGAGTGA
- Protein Sequence
- MGRSFKRKTPARDPLALRRALGAMMLGMSCKSAAREYNVPRSTLQDHWKKNKTTHTDSATPIEVGLKSLYVAKHGHKTLFMKEQEDALEEHMLHLSDVYFGLTPKQARSLVFEFAQKLHIVYPNAWDDQKSAVSAAGCRAPSFFVFPRVRFHQHFLNGSPIGCVGGANPSGWSNAELFLEFLKRFQKFTRYSVVDPILLLLDNHESHRSLSALEYCRSNGIHVVSFPPHCSHRLQPLDVSIFGPFKAALRGEFESFMRMHPGRAIQIYDIPSMVARALELGVSEVNIKSGFKATGIWPIDPNIFEDIDFLPSSTTDQPRPDNNDIPNVEAILTDKENEKAIHEDLINYSNKSTSLPSLSSSMRSVSDTLESLSPFPKIPPRKTTGTRGRKPGRTTILTVAAVVDSRIVVEEQNRQRRIEGKKSRGRPRKIKTRLETRTKIPEKQPRQESQSPQHSTSGFNLHSRQQRSSVRPTYSESDDSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -