Sgif009071.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010009319.1:192-1061[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6 8.4e+03 -2.6 0.1 36 45 4 13 3 13 0.85 2 2 1.5e-12 1.3e-09 38.4 0.0 1 38 17 54 17 58 0.95
Sequence Information
- Coding Sequence
- ATGCCAAACGTATATAAGCGGAAACCCACATCATCTCGTGGATCATGGGACAGAGATAATATGGCTGAAGCGATTGAAAAAATGCGATCTAAGGAAATGAGCATTCGAGAAGCTGTCAAGGAATACCAGGTCCCTTTTGGAACTCTTCATCGTCGACTAAAAGCATCAAGAGCGGAAAATGATTCTCTCGGACCAGGAGGCTGTCTTGGAGAAGAAAATGAAAAAAAGTTAGCGCAATACCTGAAAAAAATTTGTCACGTCGGATGTCCTCTCGACCGAACTAGAGTCCGTCAGTTGGCTTACGCGTTCGCAGAAAAGTTGAGTATTAAACATCGATTTAACAATGAAACAGAAATGGCAGGTTACCCCTGGCTCAGTTCTTTTCTTCGTCGGAACCCAGATCTTTCGATTTGGAAAACAGAAGGATTATCTGCAGCCAGAGTTAAAAGCACCGGAAATGTGATCACAGCCAAAGGGGCGAAGGCTGTCAATAAAATCACAACTGGTGAGAAAGTAGAATCAGTGACAGTCTTAGCTTGCTGCACGGCTGAGGGCAGCTACTTGCCACCCACGGTTATTTTAAAAGGAAAAAATAAAAAGCCAGAATTTGAAGACGACATGCCCCAAGGATCGGTTGTTTACATGAATCAACAATCAGCCTACATCAATTCTATTTTGTTTTTGCGGTGGTCGAAGAAGAATTTGTGCCACGAAAAGCTCCAGGAAGAACCATCCTCATCTTAG
- Protein Sequence
- MPNVYKRKPTSSRGSWDRDNMAEAIEKMRSKEMSIREAVKEYQVPFGTLHRRLKASRAENDSLGPGGCLGEENEKKLAQYLKKICHVGCPLDRTRVRQLAYAFAEKLSIKHRFNNETEMAGYPWLSSFLRRNPDLSIWKTEGLSAARVKSTGNVITAKGAKAVNKITTGEKVESVTVLACCTAEGSYLPPTVILKGKNKKPEFEDDMPQGSVVYMNQQSAYINSILFLRWSKKNLCHEKLQEEPSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -