Sgif009538.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010018487.1:406541-408024[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-11 5.6e-08 33.1 0.0 3 40 17 53 15 57 0.90 2 2 7.3e-05 0.064 13.8 0.0 23 44 314 335 294 336 0.76
Sequence Information
- Coding Sequence
- ATGACGCGTAAGAGGAAGCGCACCTCGAACATTGCGAGGTGGTCCAGTGATGACTTGCAAGCAGCATTAAAAGCCATAAAAGAAGGGAAACCAATGACGCAAGCGTCCGCTTTATACGGAGTTCCTCGTACAACAATTTATAGAAGATTGAAGCGCAATAAATTTTCCGCCCCAAAAATGGGTCGCAAGGCTGTCTTCTCCACCGAGCAAGAGGAAATTCTAACCAACCATATAAACAAATTACAACGCACAAGTCCCTTGAACTCTCAAAAAGTTCGAAAGCTAGCTTTCGATCTCGCTGAAAAATTACAACTTGATCACAATTTTAATAGAGAGAAACAAGAAGCTGGGCAAGAGTGGCTTGCATCTTTCCTGAAACGGAACCCTCGTGCTCAAATTATTAGACGAGGAGAGAAAAGCCATGAGGTGAACGAACTAAACAACGAAAATCCAAATTTCGATGAAAAACCCTTTACGAGTGAGACTGAGACTAAAATTAAGAATGAAAAAATATTTCTGGAGGTGGAAATGGATTTTTCGGATGATTCAGAACCCCTCACTTCCTCTACTGATCCTTTGGAGAACATTTCTGAGAGTTTTGAGAGGAACCAATACTTAGAGAATTTAACGAGTGTCGAAGAAACTGAGGAGGAAGTTAAAAGGAAGTTTGAAATGAAGTTAAGAGTGAGGAAAAAGATTCTCTCAAAAGATGAGAGACGTACTTTACAGAGTTGCGTTGACAAACCAATGAGGATAGTGGATAGAAGTACCTTTCTTGATCAGCTCGAGAAGTCGAATCAGGTTGTGACTGAAAAGGAAGATGATTTACCCGCATTGAAGAACCGTAGAAAGCGAACGACAAAAACAGCGTCCTGGACAGCCAATGATTTGAACTCTGCTCTCCAAGAGTTAGCACAAGGAAAAACTATGACAGCAGTTTCAGCTTTGTATGGGGTTCCCCGTACTTCAATTTACAGAAGACTGAGGCAGAATAATTTTTCTTCTCCAAAGCTCGGTCGAAATTCAGTCTTCACACCTAAACAAGAAGAGTGCCTCACTGATTACATTTTAAAAGTTTCGAAATTTTGTCCCATGAACACGACACAATTAAGGAGAATGGCTTTCGAATTAGCTGAGAAATTGAATCTAGACCATAATTTTAACAGAGATATAAGACTTGCTGGAAAGGATTGGTTGACGGGTTTTATTAAAAGAAATCCTAGGGCGAATTTTAACGGTAAAAGAAATTTATGTGAAACGGAAAATTACCAAAACGGAAAAAAAGAGTTCTTCTATGATTTTAATGATTTAGTTAAATCTTTTCCATCCCTCGAATGTCAAACTGTTGATGTTTAG
- Protein Sequence
- MTRKRKRTSNIARWSSDDLQAALKAIKEGKPMTQASALYGVPRTTIYRRLKRNKFSAPKMGRKAVFSTEQEEILTNHINKLQRTSPLNSQKVRKLAFDLAEKLQLDHNFNREKQEAGQEWLASFLKRNPRAQIIRRGEKSHEVNELNNENPNFDEKPFTSETETKIKNEKIFLEVEMDFSDDSEPLTSSTDPLENISESFERNQYLENLTSVEETEEEVKRKFEMKLRVRKKILSKDERRTLQSCVDKPMRIVDRSTFLDQLEKSNQVVTEKEDDLPALKNRRKRTTKTASWTANDLNSALQELAQGKTMTAVSALYGVPRTSIYRRLRQNNFSSPKLGRNSVFTPKQEECLTDYILKVSKFCPMNTTQLRRMAFELAEKLNLDHNFNRDIRLAGKDWLTGFIKRNPRANFNGKRNLCETENYQNGKKEFFYDFNDLVKSFPSLECQTVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394198;
- 90% Identity
- iTF_01394198;
- 80% Identity
- -