Scon010036.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- zfh1
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000042.1:3186785-3192830[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3 4.1e+02 2.4 0.2 3 20 367 384 366 389 0.87 2 10 3.9 4.9e+02 2.1 1.0 2 23 447 467 446 467 0.93 3 10 0.00063 0.079 14.1 0.5 2 22 580 600 579 603 0.89 4 10 0.011 1.4 10.2 0.0 2 23 618 640 617 640 0.96 5 10 0.065 8.2 7.7 0.1 1 23 657 681 657 681 0.92 6 10 0.0029 0.36 12.0 0.6 2 23 698 720 698 720 0.93 7 10 0.081 10 7.4 0.7 1 21 725 745 725 746 0.95 8 10 3e-05 0.0038 18.2 3.2 1 23 804 825 804 825 0.98 9 10 0.00026 0.032 15.3 1.0 1 21 831 851 831 852 0.95 10 10 0.72 89 4.5 0.5 1 16 874 889 874 891 0.92
Sequence Information
- Coding Sequence
- ATGGAGGTTTACGAAGACGAGGATGACACCCACTTCTGTATAAAGTGTCAGGCGACAATTCAAGGCCTCGAGAATTATGTGCGTCATCGTCAATCTGGATGCAGCACTAAAGAAGTCCATTTACCACCTTCAACCTCTGCAATATCGCCCGCAACAGTCTCATACccagagattttaaatgcagACGCCTTCTTCAGTTCTTTGGAACTCCAGAGTAGTTCCAAGTCGAATCCTCGACGCACAACTTCAGCGGATAGTTCAAGAAGATCTGGAAGAAACGAGGatcgaaaacgaaaaaatcggAAAGACAAGAGTCCTGAGGATTGTAACTCTTCAAAGGAGAAACTCCACAATCTTTTGCCAGTTGTGACTGATCTTGATGATCCTACAGATCACATTGGCATACCTTCTCTAGTCGGATTCCCTGATATAGTATCAACCAGCAAACCATCATCTTCTGGAAAAGTAGCTTGTCATTCCCAGTTGGTTTCGTCTGGAAAGATAGAACACCCAGATTTCCATGGAAAAAATGATTCTATGGAAAGTATGACATCTAAACAGCTGGATAGAAAGCGTGAAGACTCTCATAGACTGGATGCGGATCATCAGGTCTGGTTAGAGGACACTCTCTTGGTTGACTTGGTTGGAAACTCAGTCAATAAAGACATATCAAATTCCAGTCTAAGCAGATATGAGGATTTCGATTACCAAGAGGAGGAAACGGAAGAAGAGAGTCTGGAAGAGGAAATAGAAGAGGAAGAATCGTTTTCTGAATCTGATAATGAAGATCAAGCGTATCCTCCTCGGGGTCACACAGGTGGTAAATGGAAGCCAGGGCATGAAAGCGTTTCCCAGATGTCGCAGGCGATATCACATCATCCCCTTGAGGAGGACGTCGAGATGATTCTGGAAGATGAGGAAGAAGGTCATCATCCTCCGCCATCCCACACTGGGGGGAAATGGAAACCTACTGACAGCAATTCTATGCACaaaccCGAAGAGGAGGAAAGCAAGGGTGTTGAAGAGGAACCTCCACCGGGACACACGAGAGGGAAATGGGTACCCGGAGCACGTGCTGATATAAGCACAGGATATTGGTGTAATCCTTGTGGCAGGAATCTAGCTTCCCGTGTGCTTTACAACAGGCACCTGGGCTCCTTTCTTCACGCCAAAAGAAGCATACAGGATATGGACAGTGCTGTACAGTTTCCCCAGTCTCTCCGCCGCAAAGCCAAAAGACAAAAGGCTTTAGTTACTAAGGTTGAAAAGGGTTCCGAGGACAATGACGAGGAACCGAACATGAAGAAGCGGCTTCgcaaaagagaaaaggagGTCTTGACTTGTGAGATGTGTCGCACCCGAGTGCGTCGAACACAAATGGGGAAGCATCTACTTTCCCATTATCACTGTCGAGTAGCAGGTGCAAACCCTTATAGAGCGAAAGCTCAGCAATTCCTTTTGGAGAACATGGAGAACGTCGTTCGACAATGTCCTTTTCAATGTGCTCCCTGTCGATTTTACTGCAACACAGAGGACACATTTTTGTTGCACTGGCGTTCTTCCTTGCACCTGTCGATTATCAACAAgatTGACGGAGGTTTTAAATGCAGTTCTTGTGCTTTCTGGTGTGACGGGAACTCAACGATGGAACTTCATCTCTTGAGTTCTTGTCATCGAGACCAAGTTGCGATGATGAACGGGTCAATTCCCGTTGTAATATCTAGATGGCGAAATCTAGTATGCAACACATGTGACCAATCTTTTAGATATAATATGCAGTTGTCTCAACACGCGAGACAAACTGGACATGAAGTCAACTATACTGTCACTGATGAATATCAAAGACGGATTAAGTGCAATGCCTGTGGTCTCATAGTAAGATCTCTGGTTGCTTTACAACGCCATCAACTATCAGTGCATGTAAAGGGCGGCAAAAAGGATCAGGAAACAAGTTCCGTTTCAGCGCCTTACTTTTGCTCCTTCTGTTCCTTGACTTTCGAAACAGCAGCAGCTGCTGTCATTCATAGGAGAACTATAGCTCACAAGGAGATTGTTAAGGCAACCAAGTCAGACAATCCCATAACTATTAGAGAATGTTCTAATTGCAAGAAACAGTTTCGCACCATTGCGGAGTACAAAACGCATCTTCTCGAGGTTCATCCTGATCTCTGTTACAGatgtCCACAGTGTACTTCGATCTTTGCATTTCCGCAAGAGGTCACAAAACACACCAAACACAGTAAATGCTTTATAAAACAAAAGCAAACCGCTTCTGCAACCAACGTAGAATGGAAGTGTAATCAGTGCCCTTTCTCAACCGATTTACAATGCGAGTTCATCTTCCACGAAGCACTTCATACTGGACCGTTTGAATCCAATGAACCTGGGAGTAGTAAGACATCAGGAAACTACCAATGTCCTCTTTGCAAAAAGTGCTTCAACAAAGTCACTCTTCGAAATCACATCAGAGGTCACACCGGCGATCGTCCCTTTCCTTGTTCGAAATGCAGCCAAAGTTTCAACAGAAGGAATGACCTGAATATTCACCGGAAAAATTGCAAGGGCCTCTCATCTTCAGAATTGCAGAAGGGAGAAGGAATATTCCATCGGCGGAGGGAATTCTCCTGTGCAGAGTGCAACAACGCCTTCTTTACCAAgtCCTCTTTCATCCTTGGGTCGAATATCCTTGAATTCCTCTTGAAGTTTGATGCGGCTCGTCTTGcttcggaatttttttctcgtatGTCACCCAGTATGCCTATCTGCACGTTTACTTACGAAGCACCATTACTGCTATGGCGTTGGCACGACTTTGCTGGTCAGCCCGTGTATAGACACCCTCCAGGATGCTCGGGTGCCATCCTGATCATGGTGTGCGTGTTAGAGATCTGCACGGAGCACGGCGAACAATGCGATGCTTGCTGGGCGCTGGAATCAGGACAAGGGAGTGTTGGTGAGATGTCCTCTGGTTCGGTACCGACGTCCTCGTATACCGACACGGATGGTAGCCGATGGGGTTGA
- Protein Sequence
- MEVYEDEDDTHFCIKCQATIQGLENYVRHRQSGCSTKEVHLPPSTSAISPATVSYPEILNADAFFSSLELQSSSKSNPRRTTSADSSRRSGRNEDRKRKNRKDKSPEDCNSSKEKLHNLLPVVTDLDDPTDHIGIPSLVGFPDIVSTSKPSSSGKVACHSQLVSSGKIEHPDFHGKNDSMESMTSKQLDRKREDSHRLDADHQVWLEDTLLVDLVGNSVNKDISNSSLSRYEDFDYQEEETEEESLEEEIEEEESFSESDNEDQAYPPRGHTGGKWKPGHESVSQMSQAISHHPLEEDVEMILEDEEEGHHPPPSHTGGKWKPTDSNSMHKPEEEESKGVEEEPPPGHTRGKWVPGARADISTGYWCNPCGRNLASRVLYNRHLGSFLHAKRSIQDMDSAVQFPQSLRRKAKRQKALVTKVEKGSEDNDEEPNMKKRLRKREKEVLTCEMCRTRVRRTQMGKHLLSHYHCRVAGANPYRAKAQQFLLENMENVVRQCPFQCAPCRFYCNTEDTFLLHWRSSLHLSIINKIDGGFKCSSCAFWCDGNSTMELHLLSSCHRDQVAMMNGSIPVVISRWRNLVCNTCDQSFRYNMQLSQHARQTGHEVNYTVTDEYQRRIKCNACGLIVRSLVALQRHQLSVHVKGGKKDQETSSVSAPYFCSFCSLTFETAAAAVIHRRTIAHKEIVKATKSDNPITIRECSNCKKQFRTIAEYKTHLLEVHPDLCYRCPQCTSIFAFPQEVTKHTKHSKCFIKQKQTASATNVEWKCNQCPFSTDLQCEFIFHEALHTGPFESNEPGSSKTSGNYQCPLCKKCFNKVTLRNHIRGHTGDRPFPCSKCSQSFNRRNDLNIHRKNCKGLSSSELQKGEGIFHRRREFSCAECNNAFFTKSSFILGSNILEFLLKFDAARLASEFFSRMSPSMPICTFTYEAPLLLWRWHDFAGQPVYRHPPGCSGAILIMVCVLEICTEHGEQCDACWALESGQGSVGEMSSGSVPTSSYTDTDGSRWG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01393102;
- 90% Identity
- -
- 80% Identity
- -