Scon004037.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Synergus coniferae
Gene Symbol
-
Assembly
GCA_032164275.1
Location
JAUEJJ010000013.1:12126800-12139121[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.03 3.7 8.8 1.4 1 20 26 45 26 45 0.96
2 12 7e-05 0.0087 17.1 1.0 1 20 101 120 101 122 0.96
3 12 0.0021 0.26 12.5 1.2 1 21 147 167 147 168 0.95
4 12 0.062 7.8 7.8 0.3 1 21 280 300 280 301 0.93
5 12 0.41 51 5.2 0.4 1 21 334 354 334 355 0.94
6 12 0.14 18 6.7 2.1 1 20 452 471 452 473 0.94
7 12 0.00069 0.085 14.0 0.1 1 21 560 580 560 581 0.96
8 12 0.00013 0.017 16.2 1.0 1 19 589 607 589 609 0.97
9 12 0.00018 0.023 15.8 0.4 1 22 732 753 732 753 0.96
10 12 0.00025 0.032 15.3 4.4 1 23 762 785 762 785 0.95
11 12 0.066 8.2 7.7 0.7 1 21 872 892 872 893 0.95
12 12 0.15 18 6.6 7.5 1 23 901 924 901 924 0.97

Sequence Information

Coding Sequence
ATGGAACAGTTTCCAGAAGTTGATGGTCGTCGTCCAATGactgaagaaaatgaagaaacttcACCTCAAGGCAGTTTTGTTTGTCATTTTTGCGGCAGGGAATACAAGTGGTTAAAGAGCTTAACGCGACATCAGTGGAAATGTGGAAATCAAGGATCCAGGAAATATTTGTGTAAATTTTGTAACGCGGAATTTTTCCGAGATTTCCAAGAATATATGTTTCCTGACTGGAGCTGCAATCCTGAAACACTGGAGCCACTGAGAGAGTTCCAGCCCAGTGATTATGTTCAAGAACGACGATTTAAATGCAATCGTTGTGGAAAGGCTTACAATTCTCTAAAAAGCTTGAGACGTCATCGTTTCCACTGTGGTAAACAGTATGATCCTACAATTGGAGgatttgtacaaaatttcgAGGAAAATGATGACCGAGCTGAGTTCGAGTGCACTTACTGCAACAGGGCCTACCGATGGAAGAAAGGTCTGAAACGTCATCAGCAACGCTGCGAAGCAAAAATGGCACAAGAAAATCCAGATCAGAGTAATTTAGAGGTAAATCAGacgaatgaatttcaagataatcCGGCAGAAGAGTCTCGAGATAACACTGTAGAAGAATCTGAAAATAACGTGGCAGAAGAAACTGAAGATAATTTGGCAGAAGAGGCTGAAGAGGTTGAAGAAGATTTAGTTGAAggtcataaaaatattcaagtctCCCAAAATCCACGAAGAGATTCTCACCAGTCGGAAGAAGATTCGATTGTTGATAAAAGTGTCAATGCAGGACCTTTAAAATCTGCAATAATGCGAAACAGAAATGCAACTTCAGGTCGCTTTCAGTGTATTTTATGTGGCAAAAGGTACGGCTggttgaaaaatttgagacGTCATCAGAGGATTTGTCGTAAAAAAGTGAGCAAGCAACGTTGGAAGGAATGTAAAGTGATGATTGAGCCTCTTCAATTGAGGAGTTCTAAGAGGATTTCAGAGCAAAATTTCAAGTGCCAGAGTTGTGTCAGAGAATTTAAATGGTTGAGAGATTTGAGACAACATCAATCGATTTGTGGTAACTCATCTCAGAATATATGGAATGTTAGTGAAGCTTCTACAAAATCAGATAAAAATCCATCGATTCCAAAAAATCATCAGGGATCTTCTTATTCTGAAGGTTACAACAACGAAGGTCCCGGTCTTTACAAATGTGCATTTTGTGCCAGAGAGTACAAATGGCGAAGAAGTTGGGATGAAGGCGAGTGGAATGAAAACATGATGAACTTTGAACCACCGCTACTAGACGAGTCTGGATTTGAACAAAGTGTGGAAGAAAATGACAACGAAGCTCAAGGCACCTTCAGATGTTCCCGCTGCGgaagattttataaatggaTGAAGGATTTAAAACGTCATCGACATGGCTGTGgaTGGACAGAAGATTCATGGAGACATCTCAGGATAAAGGAAGAAGTTCCCTGGGCTGGATTCGTTTTAGGCACTGAGGAAATTGACAAGGAGCAAgtGAATACTCCTTTCGAGAGCATCGTTATCTACAGTGATAGACCTTGTATCATTGCAGTCGattcaCTTACTCTAGATGAAGTTACTGGCTTTGAATGGTATCCACAGGAAATTTTGTCTCGAACTCGTGGACAAGTCACTCCACAAGATCAACAACAATACATGTGTGGAGAGTGTGGCAAAGGCTATAAATGGATGGATAATTTAAGAAGACATCAGAGACTAGAATGCAacaaaaaaccaaaatattCATGTGTGATGTGTAACAAAACGTTTTACAGACGTTacgaattgaaaaatcatAATGAAGGACTTAGTACGTCTTTTCAATTTGTTCACACATCACCAGCACCAGTTGACAAACCTAACAATACAAAAGCCTGGAAGATTTTGCCAAAGCCTGCTAAATCGATTGGATTAACAACTCTTATTGTACCATCACCATCTGGAGGACAACCACAAATAGCTCTAATGCCCGTGCCAAATAGTTCTGATGATCCTGACGAATATAGAGCTTTGTGGATGctagaaaaaaatactcaaGATCTGGAGATGAAAACCGCACAATTTGAACCAAATCTAAGGAACTCTTATAAGTGGAAATTGTCTAGTCTTGGATCAAGATCGACAGCTCAACCAGATAGTGGAGAATTTGTTCGTGTACAATTGCCGGAATATGTGTGTTCAAACTGTGGTAAAAGATATAAATGGTTAGACAGCTTAAAAAGGCATCAGAGAGTCGAATGTGGTAACAAAGCAAAAAAGTTTTCCTGTCACATGTGcgacagaaaatttaaatatcgatACGAAATGCGAAATCATATATCGTTACAGCACGGTCGAAAATTACCAGGGGGATTGATTGAGCAGTACTATCAATACCAGTCCATGTACCTTAGTCTGGTAGCTAAAAGGTGGGATTATCCGGATCAATGCAACACTGTGTGGATGGTAGACAAGAGCATTCAAAATCTGGAGTTGAAGACCCCACAATCTGGACCACGTCTCCAGAACTCTTACAGATGGAAATTATCTAGTCTTGGATCAAGTTCATCTGCAGTAACTCAATCTGCAACTGGAAGATTTGTTGGAGAATTCACGTGTTCCAATTGTggcaataaatataaatggatGGACTCTTTAAGAAGACATAAAAGAGTCGAATGTGGCAAATTACCTAGATTCTCGTGTTCGGCATGTGGTCACAGAACTAAACATCGATCTAATATGCATTTGCACATCAAAAAGCAGCACAAGGATCAAAAAGTTTATATCGTTGATTTGTAA
Protein Sequence
MEQFPEVDGRRPMTEENEETSPQGSFVCHFCGREYKWLKSLTRHQWKCGNQGSRKYLCKFCNAEFFRDFQEYMFPDWSCNPETLEPLREFQPSDYVQERRFKCNRCGKAYNSLKSLRRHRFHCGKQYDPTIGGFVQNFEENDDRAEFECTYCNRAYRWKKGLKRHQQRCEAKMAQENPDQSNLEVNQTNEFQDNPAEESRDNTVEESENNVAEETEDNLAEEAEEVEEDLVEGHKNIQVSQNPRRDSHQSEEDSIVDKSVNAGPLKSAIMRNRNATSGRFQCILCGKRYGWLKNLRRHQRICRKKVSKQRWKECKVMIEPLQLRSSKRISEQNFKCQSCVREFKWLRDLRQHQSICGNSSQNIWNVSEASTKSDKNPSIPKNHQGSSYSEGYNNEGPGLYKCAFCAREYKWRRSWDEGEWNENMMNFEPPLLDESGFEQSVEENDNEAQGTFRCSRCGRFYKWMKDLKRHRHGCGWTEDSWRHLRIKEEVPWAGFVLGTEEIDKEQVNTPFESIVIYSDRPCIIAVDSLTLDEVTGFEWYPQEILSRTRGQVTPQDQQQYMCGECGKGYKWMDNLRRHQRLECNKKPKYSCVMCNKTFYRRYELKNHNEGLSTSFQFVHTSPAPVDKPNNTKAWKILPKPAKSIGLTTLIVPSPSGGQPQIALMPVPNSSDDPDEYRALWMLEKNTQDLEMKTAQFEPNLRNSYKWKLSSLGSRSTAQPDSGEFVRVQLPEYVCSNCGKRYKWLDSLKRHQRVECGNKAKKFSCHMCDRKFKYRYEMRNHISLQHGRKLPGGLIEQYYQYQSMYLSLVAKRWDYPDQCNTVWMVDKSIQNLELKTPQSGPRLQNSYRWKLSSLGSSSSAVTQSATGRFVGEFTCSNCGNKYKWMDSLRRHKRVECGKLPRFSCSACGHRTKHRSNMHLHIKKQHKDQKVYIVDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-