Basic Information

Insect: Synergus coniferae
Gene Symbol: -
Assembly: GCA_032164275.1
Location: JAUEJJ010000004.1:2682856-2686239[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0015 0.18 12.9 0.5 2 23 74 96 74 96 0.95

2 8 0.0028 0.35 12.0 6.1 1 23 100 122 100 122 0.97

3 8 1.5e-05 0.0019 19.2 4.3 1 23 128 151 128 151 0.97

4 8 7.5e-06 0.00093 20.1 2.2 1 23 158 181 158 181 0.97

5 8 0.027 3.3 9.0 3.4 1 23 216 238 216 238 0.98

6 8 1.2e-05 0.0015 19.5 0.5 1 23 242 264 242 264 0.99

7 8 8e-06 0.001 20.0 0.3 2 23 270 291 270 291 0.98

8 8 2.8e-07 3.5e-05 24.6 1.3 1 23 297 319 297 319 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0015	0.18	12.9	0.5	2	23	74	96	74	96	0.95
2	8	0.0028	0.35	12.0	6.1	1	23	100	122	100	122	0.97
3	8	1.5e-05	0.0019	19.2	4.3	1	23	128	151	128	151	0.97
4	8	7.5e-06	0.00093	20.1	2.2	1	23	158	181	158	181	0.97
5	8	0.027	3.3	9.0	3.4	1	23	216	238	216	238	0.98
6	8	1.2e-05	0.0015	19.5	0.5	1	23	242	264	242	264	0.99
7	8	8e-06	0.001	20.0	0.3	2	23	270	291	270	291	0.98
8	8	2.8e-07	3.5e-05	24.6	1.3	1	23	297	319	297	319	0.98

Sequence Information

Coding Sequence: ATGTCCCTCGACTTCTACAAAGCTAGTCTTCGGCTTCCCTTAATGCAATCGCTAAAACgcacacttaaaaaaaaggaaaggagaAAATCATCCCTTGTGAAAAGTTGCACCAATACAACCCTCACTAAGGCAGAGAAGGAAGAAgaagttaaagaaattaaagaagatcCATTTGTCTGCGAAGTTGAAGTAgatcaaattttagaaaatgttcgTGAAACATGTCCCTTTTGTGAGAAACGCTTCGACACTGTCTGGAAGATGGAACGTCACGTAAAAAATGCTCATAGGAAGCCCCATAAATGTGACAAGTGCAGAAGATCTTGCTTCACACAAGAAGCCCTCAACAAACACAAATTAATTCACTTGCcggattattattttgaatgtacTACTTGTCATCGGAAATACAAAAGcgaagaaaatctaaaacgCCATCAAATTCGTTCTCATAGTGATTGTGACCCGAATTTCATTTGTGATCATTGTGGAAGGCAATACAAGCAGAAATTCGACTTGATGGttcatttgaaaagaattcacgAGAGCGAATTGCAGATGTGTCGTTTTTGTGGCCTGGAAGTGAAAGATGTAAAGAGCCATGAGTGGCGTCACGAGAAGCGAACTCGTGAAACAGTCTATCAATATCCTTGTCATCTATGTCTTAGGAAGTTCCACAGTAAAGTGAGATTAGATAATCATCTCTTGAttcataaaaaagtatttaaatgtGAAGATTGTGGAAAGGAATATCGCGGCCCAAGAGAATTAAGTGGTCATAAGCGAAAGCATCAGCAAGCTATCAACACCTGCACTATTTGCGAAAAGGTTTTCCCTTCAATTAGCAATTTTTATCAGCATATCCTGACTCATGCTGGAATCAGACCTTACAAATGCGACATCTGTGATGAAGATTTCAGTCAACGTTCGAGTTTATTGAGGCATCGGAAGAATCATCCAGGACCTTTGCCGCCTTTAGCATCATCGAGTCCTCAAATTGCCGAACTTGCCAGATCGTTTCTTCACCATTTTCAAAGTCCTTCATATGATAAAAACCTTGTAGTGAATGTGAAATTGTGA
Protein Sequence: MSLDFYKASLRLPLMQSLKRTLKKKERRKSSLVKSCTNTTLTKAEKEEEVKEIKEDPFVCEVEVDQILENVRETCPFCEKRFDTVWKMERHVKNAHRKPHKCDKCRRSCFTQEALNKHKLIHLPDYYFECTTCHRKYKSEENLKRHQIRSHSDCDPNFICDHCGRQYKQKFDLMVHLKRIHESELQMCRFCGLEVKDVKSHEWRHEKRTRETVYQYPCHLCLRKFHSKVRLDNHLLIHKKVFKCEDCGKEYRGPRELSGHKRKHQQAINTCTICEKVFPSISNFYQHILTHAGIRPYKCDICDEDFSQRSSLLRHRKNHPGPLPPLASSSPQIAELARSFLHHFQSPSYDKNLVVNVKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01390602;
90% Identity: iTF_01392267; iTF_01390602; iTF_01391469; iTF_01394620; iTF_01393012; iTF_01393787;
80% Identity: -