Scon008976.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus coniferae
Gene Symbol
drl
Assembly
GCA_032164275.1
Location
JAUEJJ010000038.1:3782286-3785688[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.7 3.3e+02 2.7 1.9 1 10 317 326 317 339 0.70
2 16 0.17 21 6.4 1.8 2 23 347 369 346 369 0.88
3 16 5.2e-06 0.00064 20.6 2.4 1 23 375 397 375 397 0.98
4 16 0.011 1.3 10.2 2.9 1 23 403 425 403 425 0.98
5 16 1.2e-07 1.4e-05 25.8 1.6 1 23 431 453 431 453 0.98
6 16 0.012 1.5 10.0 0.0 2 21 465 484 464 485 0.93
7 16 0.027 3.4 8.9 4.9 1 23 505 527 505 527 0.98
8 16 0.0086 1.1 10.5 0.2 1 23 533 555 533 555 0.95
9 16 0.046 5.7 8.2 2.2 1 22 574 595 574 595 0.93
10 16 0.84 1e+02 4.2 3.1 3 21 604 622 602 623 0.86
11 16 0.013 1.7 9.9 0.7 2 23 631 652 630 652 0.95
12 16 5.4e-07 6.8e-05 23.7 1.3 1 23 659 681 659 681 0.98
13 16 0.68 84 4.5 1.2 1 23 687 709 687 709 0.86
14 16 4.7e-05 0.0058 17.6 0.6 1 23 715 737 715 737 0.98
15 16 2e-05 0.0026 18.8 1.7 1 23 743 765 743 765 0.98
16 16 3.4e-07 4.3e-05 24.4 0.7 1 23 771 794 771 794 0.97

Sequence Information

Coding Sequence
ATGGAAGAATATAAGTCTCGGCTTCCCAAggaattggaatttaaaaaaggagtACCTGAAGAATTAAACTTAATTGCAACAAGTGATCTTCCTTCATCTTTATGTCGACTTTGTGCAAATGAAAGTGAAGAAATGCTCTGCATTTTTGGATCAACGCCAATAGAAAAAGACATAGCAgagaaaattaacaaatatttaccAATTAAAGTGCAGAAAAGCGATACCTTTCCTAGAAGTATTTGCCACCCATGTCTTGAAAAACTGGACTTAATgcacaatttttacaaaacagtATCAGAAtccgaagaaatttttcagaaagcTGAAAATAATCTTATAGAAAAATCTCGGATACCTACACGCGCTGAGAAAAGATCTGCGAATTCCTTAATTTATACTCGACCGGTGAAAAAGTTTTCCAGCACTTTGGACACTAAAGTTATTGATTCTAGAGATATTCTCTACAGCGAgacgataaatgaaaatgaattcgaGGTCATTGAGAATGAAGTGAATATCGAAGACAATTCCGAGGCCTTTAATATTTCGACCGAAGTGGTATacgaaaatgaatttgaagtaaCTGAAGAgaatgaatttgaagtaaCCGAAGAgaatgaatttgaagtaaCCGAAGAGAATGAAGTTCAAGTCCAAGATAATCCTCaggttttaaaagttttgaacgaaACTCTagatgattttcaagaagatCGTTATAACGAAGCCAGTAAAGTTTCTTCCAATATCAGTAAATTGATAAGATGTCGGATTTGTAACtcaaaattttacggaatgaAGAAGTGTTATCTTCACTCAGCCACTCATTCCTCCACGAATTATTACCCTTGTAGTCTTTGTAAAAGTGACTCACCTTCTCTGGAAAAATGGagagaacatttttcaaaacatagCACTAgtaatttacttgaaaaacgAGAGTTGAAATACAAATGCGAAATTTGTAAGAAGAAACACGTTTCCGAGGCAAGGCTGAAGTTTCATCTTCAATTCCATGAGCCTGGTGTGAAACCTTGCTACTGTGAAAAATGcgataaatttctttcttctgaGTCTGTGCTTTATAATCACTCAGTGAGAGTCCACATGCAGTTTAGGGAATTTTGCTGTGATATCTGCGGCAGAATCTTCAGatcACAACAGCAGTTGGATGTTCATCAACGAAAACATAAAAACGAAAGACCCTATGAGTGTTTCATTTGTGCTAAACGATTTCTATCAACGGATTGTCTCAGAAGACACATAAAACTTCATCTTCCTGATAAATCTTTTGAGTGTAAGGAATGTGGAAAACGATTTGACCGAAGTAATTCTCTCACAAAACATCTTCTCACTCATCAAGTTGAGGCCAAGCAGTCGATTATCTGCCAAGTTTGCAATCTGTGCAATGAAGTTTTCTTTGATTCTTCTGAAGCCGAATCTCATCTTAAAATCTGCCCCATATCAGGAGACAATTCAGTTGGGATTGAAGAGAAGAATCTCTACGCAGTCTACagATGTGAATTCTGTCAGCGATGTTACACCTCCATCGACTTTGCGAAGAATCATCAAAAATCTCATTCAGGCTCCATGCCTTATATCTGCACAATCTGTAATGTGACCTACGCAACTTACAATCAAGTAACAGCACACAAAAGTGCACACAGAAAATCAGTTCCAGATCTTCAGTCGCAAAAGATTACAACCATCACAAAGTTCTTTTTTTGCGAATACTGTGATAAAGAATTTCTACACTTCACCAACATGAATGTTCATAGGAGGTCTTGTGCCAAGACTAAAAACTGGACTTGTTACTGTTGCTCTTCCATGTTTTCAAGCCAATTCGAATTGCGTAAACATAGGAAAAGAAAGGAACCTGGTGAAAAATGGCCCTGTGATAATTGCGAGAGGACTTTTGATAACTTCTGTGGTCTTATATCGCATAAAGAGATTCATActaaaaatcggaaaatttttaCGTGCTCTTATTGCGGAAAAGACTTCCAACAAAAAGCTCATCTGGTTGTTCACATAAGAATTCACACCGGTGAAAAACCTTTCGCCTGTGATTTATGTGATAAGGCCTACATTCTTAAATCCGATAGAGATTGTCATCGGAGGGTTCACACTGGAGAACGTCCCTTCAAATGTACGATGTGTGAGAAGGCATTTCCGAATTCAGCCAGACTTCGAGAACATACACTAAGTCATTCAAATCATCGACCTTATCCTTGTCATATTTGTGATCAGAGTTTCAAAAAGTCCAACGCAAGAAATGTTCACATGCTTACTCATACTGGAGAGAAACCCTTTCAGTGCGATATTTGTGGTATCAGTTTTCGAAGATCGGGAGATATGAGAAAGCACCAAAAAATACGGCATGATTCGGAACTCCAAATCGACAATAACGAGCTGGATGTTAATTAg
Protein Sequence
MEEYKSRLPKELEFKKGVPEELNLIATSDLPSSLCRLCANESEEMLCIFGSTPIEKDIAEKINKYLPIKVQKSDTFPRSICHPCLEKLDLMHNFYKTVSESEEIFQKAENNLIEKSRIPTRAEKRSANSLIYTRPVKKFSSTLDTKVIDSRDILYSETINENEFEVIENEVNIEDNSEAFNISTEVVYENEFEVTEENEFEVTEENEFEVTEENEVQVQDNPQVLKVLNETLDDFQEDRYNEASKVSSNISKLIRCRICNSKFYGMKKCYLHSATHSSTNYYPCSLCKSDSPSLEKWREHFSKHSTSNLLEKRELKYKCEICKKKHVSEARLKFHLQFHEPGVKPCYCEKCDKFLSSESVLYNHSVRVHMQFREFCCDICGRIFRSQQQLDVHQRKHKNERPYECFICAKRFLSTDCLRRHIKLHLPDKSFECKECGKRFDRSNSLTKHLLTHQVEAKQSIICQVCNLCNEVFFDSSEAESHLKICPISGDNSVGIEEKNLYAVYRCEFCQRCYTSIDFAKNHQKSHSGSMPYICTICNVTYATYNQVTAHKSAHRKSVPDLQSQKITTITKFFFCEYCDKEFLHFTNMNVHRRSCAKTKNWTCYCCSSMFSSQFELRKHRKRKEPGEKWPCDNCERTFDNFCGLISHKEIHTKNRKIFTCSYCGKDFQQKAHLVVHIRIHTGEKPFACDLCDKAYILKSDRDCHRRVHTGERPFKCTMCEKAFPNSARLREHTLSHSNHRPYPCHICDQSFKKSNARNVHMLTHTGEKPFQCDICGISFRRSGDMRKHQKIRHDSELQIDNNELDVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-