Scon001745.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000004.1:2707812-2714240[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.034 4.3 8.6 1.0 1 23 8 30 8 30 0.96 2 19 7.5e-06 0.00093 20.1 3.7 1 23 36 58 36 58 0.98 3 19 0.00061 0.076 14.1 0.3 1 20 125 144 125 146 0.95 4 19 0.017 2.2 9.5 0.6 1 23 177 200 177 200 0.94 5 19 0.00032 0.04 15.0 1.2 2 23 207 229 206 229 0.96 6 19 0.0091 1.1 10.4 3.9 1 23 234 257 234 258 0.95 7 19 0.00089 0.11 13.6 0.9 1 23 262 284 262 284 0.97 8 19 5.9 7.3e+02 1.6 0.6 1 8 290 297 290 300 0.88 9 19 0.0034 0.43 11.8 0.8 1 23 375 398 375 398 0.97 10 19 0.65 81 4.6 1.1 2 23 441 462 440 462 0.87 11 19 0.046 5.7 8.2 3.1 1 23 467 490 467 490 0.89 12 19 0.092 11 7.3 0.1 2 21 566 585 565 586 0.93 13 19 0.00018 0.023 15.8 2.8 1 23 706 729 706 729 0.97 14 19 0.0082 1 10.6 2.0 2 23 736 757 735 757 0.95 15 19 0.00041 0.051 14.7 1.7 1 22 762 783 762 783 0.94 16 19 1.2e-05 0.0015 19.5 1.8 2 23 792 814 791 814 0.96 17 19 4.8e-05 0.006 17.6 0.5 1 23 818 841 818 841 0.98 18 19 0.00067 0.084 14.0 0.5 1 23 846 868 846 868 0.97 19 19 0.0002 0.025 15.7 0.8 1 23 874 896 874 896 0.98
Sequence Information
- Coding Sequence
- ATGCACGTTCGCGATAGTTCCTACACTTGCGACATTTGTAAAAAGACTCTTGCACCGAAATATTCGGTTCAATGTCACATGATAATTCATGGTACCGCTAAACTCTTCACTTGTGATGTGTGTAACAAAACtttcaaaaggaaaaatgaGTTCAAAACTCATTTAACGAGTCACAAATATGGCTTCAAAGATCGCAGAACACGAACaaaGAGTGAAACACTTTACATCAAGATCGAACCTGGATCCATCCTGCTACCTGTGAAACGAAGGATCAGTAAGCCTCAAGAGACTAATAACAACAATGCAAAAAGTATCAACAATCCACCTACCAATGAcaatgaaataaacaaaatcatTCATAATCTTGAGAAATACATCTGCGATTTTTGCAATGTGAGTTTCAATTCAAAACGAGATCTCACTCTTCACATCTCTCAAAATAAACTCTCATGTGAAATCTGCTGTCATCACTTTCAGTACTTGCATCAATTAAAACATCATTATACATTAAAGCATGGAGCAGAGACCTTTCCATGTTCGATGTGCAACTACGTAAGCAAATCTGTGGATACATTGCAAGACCATTTTATTAGGAAACACATTGatggaaattatatttactgtGAACTCTGTTCGAAACAATTCAAGCTTAAAAATGATCTCAGTACTCATATGAAACGGGTTCACAGTGGAATTGCCTATACTTGTGAAGTATGTGGTCACCAAAGTATCAGTCTTCACGCTCTGAAGAGCCATATGAAATTTGTTCATCATAAACCTCCGTATCAATGTAAACTTTGCCATCGTTCTATGGTTACTCAGGAGAATCTTGATCAGCATATAATCTGGCATCAAACGAAGACACTACATGAGTGTACGACCTgtggaaaaaaCGGAACACCAGGAGATCCTTTATTTATTACTCAGCCTAATTGCAATGCAGTTAACAAATTTCCAAGTAATGTCTCATTGATTACATCAGAAAACCCAAGTGAACCGATTCCAAATCAAGTCAAAGGGCCTCTTCGACCATTATATTTATGTGAGCACTGTGAGTTTACGAATTCTGACAAAGAGATTACGGAAAGTCACATCAAACAATCCCATGAACTCCAGCAATACTATAATTGTAAAGATTGTGACAGATGGTACACATCTTACGATCCTTTGAGAGaacacataaaaaaaactcacaGAAAATTGCCATACATTTGTGGTGCATGTGATTTTAAAGCCAAGGAATATGGGAACTCTCGTGTGATGTGGTTCCACATGAGGGCTAGACACGTAAGCATCTGTGGTAAaagtgaaaatcccttaacttgtaaaatttgtgGTTTTAAAAGCACCAATCATGGTATGTGGGATCATATGGAAAATAATCACATGAAAACTTATTATCATTGTAGAATTTGCAAGTATTTCTTCAGCTCACAATTAAAACTTCGATTGCATGAAGCCGAGAAACATACCAAGAAACTttcatcagaaaaaaaaatcaagtctCAGAAGCAAGTCAACAATTTCATATCAATTGCACCTAAAATAGATGGTCTTGAGTATCCTCCCACACCTCCATTGCGTCCAATTGTACCAATTACTACTACAATGGTGCCTGCAACTCCTCCTATTCTATTGAAATGCCCCTCAATGGAAAGTACCCGTTCAAAATATTGccgttttttgaaaaatctagtATGCCTCGTTTGTGGCGTTGCCTATGATGCAAAGACTAATTTACATCAGCACCTGCAAAAGTTGCAAGAAGATGTCGATGCTACTTTGAATCCAACCTTCACGATTGTCGGCAGGCCTTGGACAATTGAAAGGACCTCTGATGAAAACATCGAGTTTAATATCGAATGTAAGGAAGAACGACTCGATAGGGAAAATGAAGACGAAGATAAATTAATGGAAGAGGCAAGTTTGGCCAACCCTGTGGCAGATCAAGAAGACGAATCCTTgatgaaagaagaaaacaatttgCACATGTACGAAAGAAATCAAGCTGCGTTCTACAATTCAAATGATAACTTGCAGAATGAGAGCACTTCGATCGCTAATTGTCCACCTCTTCCTCTTGAATGTGTTTTGGTTGATGAAAAGCAGACAATTTTTCCGTGTGAAATGTgtgaaaaggtttttaaatataaaagaggTGTGCGAGAACACATGAAACGTTGTCACACTCAAAACGAAACTGTAGAATGTAACATTTGCGGAATTAAATgcagcaatttttatttgactcgTCATATAAAAAATCGGCACACGAAACCTGCCTTTGAGTGCAAAAATTGTGGCAAAGGTttcgacaaaaaaaataatcttgataTCCACACATGTACCAAGTACAAGAAGAAATCTGCTTTGGTGTGCAAAAAATGTGGCAAAAGCTTTGACAAAAAAGAGAATCTCGATATCCACAAACGTAAGaagcataaaaaaaagtatcagtGTCTTTTCTGCAAGAAACCTTTTGCAGACAATGCGAAAGTAAAGGTTCATATGAGAATCTATCACGATTTGAGACCATATCCTTGTCCCGCTTGTAATAGACCTTTTACGACTAAACAAGCAATGCATCAACATTTACTCTTACACACAGGAATACGTCCTTATGCTTGTGACATCTGCGAAGAAACCTATATTCAGAAATCTAATCTCAACTTTCATAGGAAGACCCATCCTGGACCACTTCCTCCCATTCCACATACATCTATAATTCACATTGTGAATAAATTTACTCAGATGTTGGAACTTAAACGTCGCAGAGAGGGAAAagctaaaaagaaaaaggataaTAATATGAAGATTCCTGATGAAGATCtaagttcaaagaaaaaagaaacaaaacaaattaagaaagaaatttaa
- Protein Sequence
- MHVRDSSYTCDICKKTLAPKYSVQCHMIIHGTAKLFTCDVCNKTFKRKNEFKTHLTSHKYGFKDRRTRTKSETLYIKIEPGSILLPVKRRISKPQETNNNNAKSINNPPTNDNEINKIIHNLEKYICDFCNVSFNSKRDLTLHISQNKLSCEICCHHFQYLHQLKHHYTLKHGAETFPCSMCNYVSKSVDTLQDHFIRKHIDGNYIYCELCSKQFKLKNDLSTHMKRVHSGIAYTCEVCGHQSISLHALKSHMKFVHHKPPYQCKLCHRSMVTQENLDQHIIWHQTKTLHECTTCGKNGTPGDPLFITQPNCNAVNKFPSNVSLITSENPSEPIPNQVKGPLRPLYLCEHCEFTNSDKEITESHIKQSHELQQYYNCKDCDRWYTSYDPLREHIKKTHRKLPYICGACDFKAKEYGNSRVMWFHMRARHVSICGKSENPLTCKICGFKSTNHGMWDHMENNHMKTYYHCRICKYFFSSQLKLRLHEAEKHTKKLSSEKKIKSQKQVNNFISIAPKIDGLEYPPTPPLRPIVPITTTMVPATPPILLKCPSMESTRSKYCRFLKNLVCLVCGVAYDAKTNLHQHLQKLQEDVDATLNPTFTIVGRPWTIERTSDENIEFNIECKEERLDRENEDEDKLMEEASLANPVADQEDESLMKEENNLHMYERNQAAFYNSNDNLQNESTSIANCPPLPLECVLVDEKQTIFPCEMCEKVFKYKRGVREHMKRCHTQNETVECNICGIKCSNFYLTRHIKNRHTKPAFECKNCGKGFDKKNNLDIHTCTKYKKKSALVCKKCGKSFDKKENLDIHKRKKHKKKYQCLFCKKPFADNAKVKVHMRIYHDLRPYPCPACNRPFTTKQAMHQHLLLHTGIRPYACDICEETYIQKSNLNFHRKTHPGPLPPIPHTSIIHIVNKFTQMLELKRRREGKAKKKKDNNMKIPDEDLSSKKKETKQIKKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -