Basic Information

Insect: Synergus coniferae
Gene Symbol: -
Assembly: GCA_032164275.1
Location: JAUEJJ010000001.1:5867519-5877727[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.15 19 6.6 3.1 1 23 465 487 465 487 0.97

2 15 4.4e-05 0.0055 17.7 0.4 2 23 523 544 522 544 0.95

3 15 0.00057 0.071 14.2 4.9 1 23 550 572 550 572 0.98

4 15 0.0012 0.15 13.2 0.1 3 23 580 601 578 601 0.90

5 15 0.13 16 6.8 3.3 1 23 608 631 608 631 0.98

6 15 0.00083 0.1 13.7 3.3 1 23 635 657 635 657 0.96

7 15 0.00067 0.084 14.0 0.3 1 23 663 685 663 685 0.98

8 15 0.00038 0.047 14.8 2.9 3 23 693 713 691 713 0.95

9 15 1.6e-06 0.0002 22.2 2.8 1 23 718 740 718 740 0.96

10 15 0.0002 0.025 15.6 0.3 2 23 799 820 798 820 0.95

11 15 0.033 4.1 8.7 2.4 1 23 826 849 826 849 0.96

12 15 1.8e-06 0.00023 22.1 1.2 1 23 853 875 853 875 0.98

13 15 0.034 4.2 8.6 3.3 1 23 880 902 880 902 0.98

14 15 6.2e-06 0.00078 20.4 1.2 1 23 908 930 908 930 0.98

15 15 0.00041 0.052 14.7 1.6 1 21 935 955 935 956 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.15	19	6.6	3.1	1	23	465	487	465	487	0.97
2	15	4.4e-05	0.0055	17.7	0.4	2	23	523	544	522	544	0.95
3	15	0.00057	0.071	14.2	4.9	1	23	550	572	550	572	0.98
4	15	0.0012	0.15	13.2	0.1	3	23	580	601	578	601	0.90
5	15	0.13	16	6.8	3.3	1	23	608	631	608	631	0.98
6	15	0.00083	0.1	13.7	3.3	1	23	635	657	635	657	0.96
7	15	0.00067	0.084	14.0	0.3	1	23	663	685	663	685	0.98
8	15	0.00038	0.047	14.8	2.9	3	23	693	713	691	713	0.95
9	15	1.6e-06	0.0002	22.2	2.8	1	23	718	740	718	740	0.96
10	15	0.0002	0.025	15.6	0.3	2	23	799	820	798	820	0.95
11	15	0.033	4.1	8.7	2.4	1	23	826	849	826	849	0.96
12	15	1.8e-06	0.00023	22.1	1.2	1	23	853	875	853	875	0.98
13	15	0.034	4.2	8.6	3.3	1	23	880	902	880	902	0.98
14	15	6.2e-06	0.00078	20.4	1.2	1	23	908	930	908	930	0.98
15	15	0.00041	0.052	14.7	1.6	1	21	935	955	935	956	0.95

Sequence Information

Coding Sequence: ATGGAGGTCAAAGAGGAGGAGGCGAAAATATGCAGACTCTGCGGACAAACGGATAATTTTTGTATCGACGTGTTTAGCGAGGATGGCACAAGTCGACTTCTCCATCTTAAGATACactcgaaaataaatattttgATAGATGAGAGGGATCCTCTGCCAAAGACGATCTGTGTCCATTGTGTGGGCAAGCTCGAATTTGTTTGTGACTTCCAAGAGGAGTGTCTTCGAACGCAACAACTGTTACGCGATCGGTACAATCTGCCACCCCTATCAGATGTTGATGAACTCGAGAAACTCGACCGATCGGTTCCCGGGACCTCGACGAACAACAATAATGACTCCGACAAAGATCTTAACGCCAAAACGTCTCAACTGGGCGAGCAGGAAGCCTCCAGCGACCTCAGTAAGCCCATCCTCACGACACTTCAAAATGTTCCAGTCTTGACAACTCTACAAAATGTCACGTTCCCCCAGAACTTTTCCAACTCTCAGGAACTTCTCCAAAATCAGATTTTGGAAgaggaaaatatattacaaactcaaaatattctaaatcgAGACGGTCTGCGAACCGAGGTAGTTTTGGAGAATCGGAACTGTTCCCAAGGTCATGAGACTATCGAAGTTCACGACGTTTTACAAACTCATACCATCCTTCACACTCATGACGGTCTCCACACTCAAGACGTCCTCCAGGATCTCCCGAGATCGCCATCAACTCCAAATATCAGGAGCATCGAGAGACTCGTGAATCAGAGCAATCCGGACAGTCCCACACCTCAGGAAAGCTGCTTCCGTTGGTTGAGAAGCAGAAACGAACTAGAGATCAAATGCACCAAGTCCAGGGATGCCAATCTCTCGATTGCGGGGAGACTCCGCAGCCACAACAACAGCGTCTCGGAGTCTCCAAACTCCAGGTCGTCGAATCAGACCTCGGAAAAGACGAACGGCCAACGCAACATGATTCAGATCGCCACAAGCACTTTGAACAAGCTTCTGAACGTGATTGCCGACTCCTCCGAAGTCGAGGTTTCCGTCCGGGAGTCTATGAACTCCAGCAACAGCTCCGAGGACATCAGCTTCCTGATTGAGCTCCACAAGAAGCAGAACTCGAGTGTGAAAGTCCTCGCGAAGGTTTTTCCCGACCAAGGCTCGTGTCTCGTCGATTCGACTATTGTCGCGCTGTTGAAGGATCAGAGGAACGCGGAGATCAGTGAAATCCTGAAGATCATTGTGGAGAAGAGTCAGAGGGGGATTTCGGAGTCGGAGAACATCGAGGATGAAGAGAGCCAAGGCTCCGCCAGGAATCCGGAGGAGCTCTTCAAAATGGACGGAGAGGAGATCCATGTGGATGAGAATGTTGAACAGGTTTCtattaataatcaaataagTTACGCCTGCAGGCTCTGCAGGAAGGTTTATGAGCGCAGAGACAAGTGCACGGTTCATGTTAAGACACATTTGGGGATCAAGCAGTATATGTGCATCGTCTGCAATGCTAAGTTTGTTTGCAAGTCGGACGTGATGAAACATATCAGGTGCTCTCATACGAATCCAAGGCCTATTTCCTGTCCCAAGTGTCCTAAGAGGTTCAGGTCCAAGTTTGACTTAGCTGAGCACAACAACGTTCACAAGGGGATCAAACCTTACAGATGTTCCGATTGCGATCAAACTTATCATCACAAAGTCTCGCTCCAGATGCACGTTAAGTCTCATCTTCCACCGCAGAATCTTGCTTGCGAATATTGCGGCAAGGTCTTCCCTTATCGGACCAGATTGTTGAGTCACGTTGGCAGTGTTCATATGAAGAATAGGAGGAACTTCAGGTGCCACTTTTGCTACAATTTGTACTCGAGTTTGTCCGTTTTGAACGATCACATTAAGACGAGACATGCGACCACATTCACTTGCGAGACTTGTAGCAAGACTTTCAAGGTCGCGTCGAAGTACAAGGCGCACGTGCATCAACACACCAATCCGAAGCCTTATGTTTGTAACGTTTGCGATAATAGGTATGCCTCGAAGGCCTTTTTGAATGAGCATTTGCTTAAGCATCAGGGATTGAGGAAACATCTTTGCCAAAAGTGCGGAGCGAGGTTCGCTCAAGCGAGCCATCTGGCGGCGCATAGACACGTTCATGGGGAGAAAACACACGCGTGTCCTGAGTGTGGGAAGAAGTTTAACAGGAGGGATAATATGAAAGTGCATCGGAAGAGACATtcggaaaatgaaaaaaagggtGGGATTAAGAAGGAGGTGGAGGAAGAGGAGatTGCTGAAGACGACGAGCTACCAACTTCAGTTTGTATTAAATGCATTGGAGCGTTGGAATTTTTATGCGACTTCTATGACTGGTGTCACCGGACCCAACAGAGTCtggaaaaaaaggACGTAGTCTGTGACGTTTGCGGAAAAGCGTTTTATTCTAAAGCTCGTTTGCGAACCCACAAATTTGTCCACCTCAAGGACAGTGCCTTCAAGTGCAAGTACTGTTCATCGTATTTCATGAAGGAGGAAgctttaaataaacattacaCAAAAGCTCACTCGAAGGATTACGAATGCAACGTCTGTTCAAAGAGCTACAAGTCCAAGAAGGCCTTAAACAATCACCAAAATgTCCATTTGGAAGCGAAATATCAGTGCACCATATGCTCCAATCGATACAAGAGCCAACATATTCTAAAGGAACATCTATTGAAACACGAGGGAATTCGAAAATACAAGTGCAGCAGTTGTGCAAAAACTTTTGCGCAGCAGTCTCATCTAGCTGCACACCAGTCTGTTCACATAGGAATTCGatacaAGTGCCCAGCCTGTAAAAAGGGTTTCAACCGCCACGACAACATGAAAGTCCACACAAAAAGGTGCCAGGAATTTATCAGCAATCCAGAGTTGAAGGACTTTTTCGCAATGAAGGTCAAAACAGAAAGCGCCAGCAGCATTGAAACTGCGATGGACATCGGAAGTCCTTCCTCGAGAGGCTCGACAAATTCAGTGAAAAACCTCGGCAATGCAACAATTGCAAAGGTAGAACCAAATTCTAACAGTGATTTTTATATCTACGTAGACGACGATGATGAGGAGGATGATGATGAGGATGATGAGGAGGATGATGAGGAGGAAGATGAGGAAGAGGAAATTTCCGTCAGAGAAAATATTCTCTCGCCGGAAAGTTTctga
Protein Sequence: MEVKEEEAKICRLCGQTDNFCIDVFSEDGTSRLLHLKIHSKINILIDERDPLPKTICVHCVGKLEFVCDFQEECLRTQQLLRDRYNLPPLSDVDELEKLDRSVPGTSTNNNNDSDKDLNAKTSQLGEQEASSDLSKPILTTLQNVPVLTTLQNVTFPQNFSNSQELLQNQILEEENILQTQNILNRDGLRTEVVLENRNCSQGHETIEVHDVLQTHTILHTHDGLHTQDVLQDLPRSPSTPNIRSIERLVNQSNPDSPTPQESCFRWLRSRNELEIKCTKSRDANLSIAGRLRSHNNSVSESPNSRSSNQTSEKTNGQRNMIQIATSTLNKLLNVIADSSEVEVSVRESMNSSNSSEDISFLIELHKKQNSSVKVLAKVFPDQGSCLVDSTIVALLKDQRNAEISEILKIIVEKSQRGISESENIEDEESQGSARNPEELFKMDGEEIHVDENVEQVSINNQISYACRLCRKVYERRDKCTVHVKTHLGIKQYMCIVCNAKFVCKSDVMKHIRCSHTNPRPISCPKCPKRFRSKFDLAEHNNVHKGIKPYRCSDCDQTYHHKVSLQMHVKSHLPPQNLACEYCGKVFPYRTRLLSHVGSVHMKNRRNFRCHFCYNLYSSLSVLNDHIKTRHATTFTCETCSKTFKVASKYKAHVHQHTNPKPYVCNVCDNRYASKAFLNEHLLKHQGLRKHLCQKCGARFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHSENEKKGGIKKEVEEEEIAEDDELPTSVCIKCIGALEFLCDFYDWCHRTQQSLEKKDVVCDVCGKAFYSKARLRTHKFVHLKDSAFKCKYCSSYFMKEEALNKHYTKAHSKDYECNVCSKSYKSKKALNNHQNVHLEAKYQCTICSNRYKSQHILKEHLLKHEGIRKYKCSSCAKTFAQQSHLAAHQSVHIGIRYKCPACKKGFNRHDNMKVHTKRCQEFISNPELKDFFAMKVKTESASSIETAMDIGSPSSRGSTNSVKNLGNATIAKVEPNSNSDFYIYVDDDDEEDDDEDDEEDDEEEDEEEEISVRENILSPESF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -