Scon002204.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus coniferae
Gene Symbol
-
Assembly
GCA_032164275.1
Location
JAUEJJ010000004.1:7622139-7625704[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.006 0.75 11.0 5.9 1 23 8 30 8 31 0.95
2 13 7.6e-06 0.00095 20.1 0.6 2 23 495 516 494 516 0.97
3 13 1.3e-06 0.00017 22.5 0.4 1 23 522 544 522 544 0.98
4 13 1.9e-05 0.0024 18.8 1.2 1 23 549 571 549 571 0.98
5 13 0.0014 0.17 13.0 0.3 2 23 582 604 581 604 0.94
6 13 1.9e-07 2.4e-05 25.1 0.4 1 23 610 632 610 632 0.99
7 13 7.8e-06 0.00097 20.1 0.7 1 23 638 660 638 660 0.98
8 13 0.00067 0.083 14.0 4.4 1 23 675 697 675 698 0.96
9 13 1.3e-06 0.00017 22.5 2.1 1 23 704 726 704 726 0.99
10 13 9.6e-06 0.0012 19.8 1.5 1 23 731 753 731 753 0.97
11 13 6.5e-06 0.00081 20.3 0.7 2 23 771 793 770 793 0.96
12 13 4.1e-06 0.00051 21.0 0.3 1 23 799 821 799 821 0.99
13 13 9.7e-05 0.012 16.6 0.7 1 23 826 848 826 848 0.97

Sequence Information

Coding Sequence
ATGCACATAAAAGAAAAGCCTTTTAAGTGCAGATTTTGTGAAGAAAGATACGTAACTTCGTATCAATTAAAACACCATGTTCTTCAACACCACGAAGAGTATAATGTACGTAGGAAGAAGCGTGGTCGACCGGTGAAGAGTGCTCGATCTAGGACGAGTCATCAACCTAAGAAGTATTATAAACTTACGAAGTGTGATCCACCTATTAAGTCTGAACCACCTACGAATTATGAACAATTTACGGAGCATGAACAACCTATGGAATGTGAGCAACCTACGAAGAATGGAGAATCTACGACGTATGATCAACCTAAGAAGCGTAGCCGACCTAGAAAGTGTTCTCAACCTATCAAATATGAACAACCTATGAAGCGTGGTCGACCTAGGAAGTGTCATCAACCTATGAAGTACTGTAAACCTACAATTTGTGATCAACTTATCAAGAGTGAACCACTTACGGAGTATGAGCAACCTATGCAGAGTGATCAATATATTGAGATTAATCAGTTCACAGAGTCTGAACAATTTACTACGTGTGATGAACCTATCAAGAGTGAACCACTTACGGAGTATGAAGAACCTGCGAAGAGTGATCAATCCAGGAAGAGTTACTTGTCGACAGAGAGAGATGAAACTAAGGAGATTGATCAACCTATCAAGATTAATCAATCCACGGAGTCTGAACAGTCTACGATATATGATCAACCTAAGAAGCGTGGTCGACCTAAAAAGTGTAATCAACCTAAGAAGTTTGATCatcctaaaaaaattgatcaacctaaaaagattgaaaaaccTGAAAAGTGTACTAAACCTAAACAAATTGATCAACCTATCAAGATTAATCAATCCACGGAGTCTGAAAAGTCTGCAATATGTGATCAACTTAAGAAGCGTGGTCGACCTAAGAAGTGTGGTCAACTTAAGAAGTGTGATCAACCTAAGAATATTGATCAACCTAAAAAGATTAATCCACCTAAGAAAATTGATCAACCTAAAAAGATTAATCTGCCTAAGAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTGATCAACCTAAAAAGATTAATCCACCTAAGAAAATTGATCAACCTAAAAAGATTAATCTGCCTAAGAAGATTCATCAACctaagaaaattaatcaatcaAAGAAGATTGATCAACCTGAGAAGTGTGACCAACCTATCAAGTCCGAACaacctaaaaaaattgatcaacCTAAGAAGATTAATCAACCTAAGAAGCTAGAGCAACCTAAGAAGTTTGATCAACCTGAGAGGAGTAGTCAACTTATTAAGATTGATCAACACACAAACAGTGATCAATGCACAAAGAATAATGAATCCACGAAGAGTGATCAACTTCCGAACAGTGACGTATCTACAAAGAAGGAACTACCCACAACCTGTGAAATTTGCGCAAAAAGTTTTACGAAGCGTTCTTATTTAATGATTCATATGATAAGTCACTCAGAGCATAAACCGTTTAAATGTGATCTTTGTTCAAAGGCATTTCCTAGAAAGTGGTCTTTAACAGCCCATTTAAAAGTTCACGAAGATAGGACTTTCGTCTGTGAGATTTGTTCCAAAAGTTTTCGAAGAAAGGACATCCTAGAAAAGCACAAGAAAGTACATGATAAACCCATAAAGGGTGATCCACTTACGCAGTGTaaaatttgtggaatttaTTCTTCGTCGCGTGTTACCTTAAGGACTCACATGGTGGTAAATCACTCAGAATTAAAACCATTTAAATGTGAAACTTGTGAGAAAAGTTTTCCTAGAAAATGGGCGTTAACAGCACATATGAAAATTCACGAGGACGAAAAGCCTTTTGTTTGTGATATTTGTTCCAAAGGTTTTAGGAGAAGGGCCACCCTGAACGACCACAAGAAGGTGCACCTGATTAAGCCTAAGAATTCTAATCAACCTAAAAATAATCAGTTTAAGTGTAAAATTTGTGGGAAAAGTTATCTGTCACATCATGGATTATGGGTTCATATGATAAGTCACCACTCCGAggataaatcttttaaatgcaaatattgTCCAAACAGTTATTCCAGAAAATGGCTGCTAACGTCGCATATGAGAATGCACGAAAGAAAGGCTTTTTCATGTGATATTTGTCCAAAAACTTTTCGGAGAAAGGATTACTTAGACTTACACAAGAAATTACACAAAGAAAAACGCACGAAATGGGATCAACTTCCAAAAACTGATCCACTTacgaaatgtaaaatttgtgGAACATATTATGCGACTCGTAGTAATTTAAAGACTCATATAATAATGTATCACTCAGATGTTAAACCCTTCAAATGTAAACTTTGTCCGAAAAGTTATCCTAGAAAATGGGGATTAGGGTCACACATGAGAGTGCACCAAGAAAAGGCTTTTGCATGTAACATTTGTTCCAAACGGTATAGGAAAAAGGGCGCTTTGGACTTGCACATGAAGTTACACAGGGACAAGTGTGAAATCTGTGAAAAGgaTAATAATGAGCCGACCACTCTGCTTAATTTGCCCTCTCGTGCCATTTAA
Protein Sequence
MHIKEKPFKCRFCEERYVTSYQLKHHVLQHHEEYNVRRKKRGRPVKSARSRTSHQPKKYYKLTKCDPPIKSEPPTNYEQFTEHEQPMECEQPTKNGESTTYDQPKKRSRPRKCSQPIKYEQPMKRGRPRKCHQPMKYCKPTICDQLIKSEPLTEYEQPMQSDQYIEINQFTESEQFTTCDEPIKSEPLTEYEEPAKSDQSRKSYLSTERDETKEIDQPIKINQSTESEQSTIYDQPKKRGRPKKCNQPKKFDHPKKIDQPKKIEKPEKCTKPKQIDQPIKINQSTESEKSAICDQLKKRGRPKKCGQLKKCDQPKNIDQPKKINPPKKIDQPKKINLPKKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDQPKKINPPKKIDQPKKINLPKKIHQPKKINQSKKIDQPEKCDQPIKSEQPKKIDQPKKINQPKKLEQPKKFDQPERSSQLIKIDQHTNSDQCTKNNESTKSDQLPNSDVSTKKELPTTCEICAKSFTKRSYLMIHMISHSEHKPFKCDLCSKAFPRKWSLTAHLKVHEDRTFVCEICSKSFRRKDILEKHKKVHDKPIKGDPLTQCKICGIYSSSRVTLRTHMVVNHSELKPFKCETCEKSFPRKWALTAHMKIHEDEKPFVCDICSKGFRRRATLNDHKKVHLIKPKNSNQPKNNQFKCKICGKSYLSHHGLWVHMISHHSEDKSFKCKYCPNSYSRKWLLTSHMRMHERKAFSCDICPKTFRRKDYLDLHKKLHKEKRTKWDQLPKTDPLTKCKICGTYYATRSNLKTHIIMYHSDVKPFKCKLCPKSYPRKWGLGSHMRVHQEKAFACNICSKRYRKKGALDLHMKLHRDKCEICEKDNNEPTTLLNLPSRAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-