Scon014350.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000046.1:14849246-14851327[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0002 0.025 15.6 1.1 2 23 10 31 9 31 0.97 2 18 0.0022 0.28 12.3 2.9 1 23 37 60 37 60 0.95 3 18 0.00046 0.057 14.5 3.6 1 23 66 89 66 89 0.95 4 18 6.8e-06 0.00085 20.3 2.6 1 23 95 117 95 117 0.98 5 18 8.1e-06 0.001 20.0 1.3 1 23 124 146 124 146 0.99 6 18 1e-05 0.0013 19.7 0.5 1 23 152 174 152 174 0.98 7 18 3.1e-06 0.00038 21.4 1.1 1 23 180 202 180 202 0.98 8 18 9e-06 0.0011 19.9 0.9 1 23 208 230 208 230 0.98 9 18 8e-06 0.001 20.0 0.8 1 23 236 258 236 258 0.97 10 18 3.1e-06 0.00039 21.3 3.7 1 23 267 289 267 289 0.98 11 18 0.00013 0.016 16.2 6.8 1 23 295 317 295 317 0.97 12 18 0.0019 0.24 12.6 1.9 1 23 336 358 336 358 0.97 13 18 5.2e-06 0.00065 20.6 3.3 1 23 364 386 364 386 0.97 14 18 0.067 8.3 7.7 1.5 1 23 392 414 392 414 0.97 15 18 0.0016 0.19 12.8 5.4 1 23 424 446 424 446 0.98 16 18 0.22 27 6.1 0.3 3 22 517 536 517 540 0.94 17 18 0.00062 0.077 14.1 0.2 1 23 543 565 543 565 0.97 18 18 0.0021 0.27 12.4 2.4 2 23 573 594 572 594 0.95
Sequence Information
- Coding Sequence
- ATGCTTGACGAAAACAAGAAAAGTTTGACTTGCGACGTTTGCTGCAAAATTTTCGTGAATCCAAATGGTCTGAAAAGACACCAAAGGGTTCACTTGGTAAAAATGCCTTATGAGTGTAAACACTGCGAAACAAAGTTCAGTGCTAAAGTTAAACTTAAAGATCATTATATAAACACTCACACAGGAGCAAGTCCCTATGAATGTACAATTTGCGGCGATAGGTTTAGAAGGAAGCATGGTcttaataatcataaaatgcATGTTCACAAAGGTGTAAAGCCCTTTGAATGCGACATTTGTAAAAAACGATTCAGAGACCACTATTCCATGAAAGTGCATATAATAACTCATATGGAAGGTAAACAACCGTTCAAGTGTTCAATTTGTACAAAAGCTTATGCTAAACcctactttttgaaattacaccTTCGTACCCACGCAAACAACAAACCTTTCGTTTGTGACATTTGCTCTAAAGGTTTTGTTTCGTTATCTTATCTGAATACCCACAAAAAGATACACTTGGACAAGCAAAAATTCGAGTGCCAATTTTGTGGGAAGGGTTACACAACatcatataatttaaaaatccatgaaCAAAGTCACTCAGGACTTAAGCCGTTTGAATGTAATATTTGCGAGAAATCTTTTACGACCAAGGGATATCAAAAAATACATGTTCTTACTCATcaaaagacgaaaaatttcttttgtgaCATTTGTCCTAAAAGTTTTGTGATGCAGTCTTATCTCAATGATCATAAAAAGATACACTCAAATGATATTCAAGTGAAACGCCACGAGTGCAAAACTTGtggaaaaagatttaaaaagtcgCGTGACCTTAACGTTCATACACGTGTCCACACAGGAGAAGCCCCTTTTGAGTGCAAAACCTgtaagaagaaatttaaacacGTAAGCACTCTTAAAATGCACATGAAGTTCCACACTGAAGGTATTCTACCTTTCAAacgtgaaaagaaaataattgacgATAAACCCTTTAAATGCTACATTTGCAAGAAGCGTTTTCTCAAAGAAGCTAATTTAATAAAGCACAGAGAAAAtcacaaaaagaaaagacCTTTTGTTTGTGAAGTttgcaaaaaatcttttgtaacGAAATATCATCTTAAGGATCACAAAAAGGCACATGGAGATAGAAAACCCTACGAGTGCGATTCTTGTAAACAAGGTTTTCTGAACAAGTACAAGTTAAGATATCATGTACTAAACCATTTGCGTGTTCAGACACATGGAAGACCTTTCGAATGCGATATTTGTAAGAAAATGTTCAGgtgtaaaaagtttctaagatTGCATATAAAAACTCATGGGGAAGATGAGGTAGTTACTGAGACTGATAATTTTAAGACGTGTGAAAATGAAATGGGAGGAGATTCAAGTAGCGTTTGTTCAATAGATAATCATTTTGATCGTACCTCAATGTCTGATGCGGACGAAACAGTTAGGAGTGAAACCGAAGGTAGAGAGGATAGGCACATTACAGAGATACCAGTGGTAAACCACCAAAAACTTCACTGGTGCGAATTTTGCGAGTTAGAGTTCGATTCTATTGAGAGTTTGAGAATTCACTTTAGAACTAGTGACAATCATAAACCTTTCATTTGTAATATCTGCAACGAACGCTTTCAAGCAGATGACGATCTTCAAACTCATCTTAAAGTTCactcaaaaaataatcattctCTGGAATGTAGCGTGTGTAAAGAACAGTTTAGAAGCcagaggaaatttaaattgcaccAGATGTTTCATGAAAAGGAccaaaattacatattaagtACAATATATAAGAAGTATGCGCCTGAAGCTCATTCTAATCAGGCTTTAGTGGAAGACAAAATAGTTAGGGTGAAGACTGAATCTGTGAGTGAAATTGAGGACACAGAGAATAGTCATTTCCAAAGTCAAGCAACGTCGATCtgtgaaaaaataactgaaagtGATGAgtcgaatttaatttttataaagaaggAAACTGATCACTCGGTAGatgtaaatttcgaaatagaaTTTGAAACTGTAAAACATGAAGTGAAAGAGGAGGTTGAATAA
- Protein Sequence
- MLDENKKSLTCDVCCKIFVNPNGLKRHQRVHLVKMPYECKHCETKFSAKVKLKDHYINTHTGASPYECTICGDRFRRKHGLNNHKMHVHKGVKPFECDICKKRFRDHYSMKVHIITHMEGKQPFKCSICTKAYAKPYFLKLHLRTHANNKPFVCDICSKGFVSLSYLNTHKKIHLDKQKFECQFCGKGYTTSYNLKIHEQSHSGLKPFECNICEKSFTTKGYQKIHVLTHQKTKNFFCDICPKSFVMQSYLNDHKKIHSNDIQVKRHECKTCGKRFKKSRDLNVHTRVHTGEAPFECKTCKKKFKHVSTLKMHMKFHTEGILPFKREKKIIDDKPFKCYICKKRFLKEANLIKHRENHKKKRPFVCEVCKKSFVTKYHLKDHKKAHGDRKPYECDSCKQGFLNKYKLRYHVLNHLRVQTHGRPFECDICKKMFRCKKFLRLHIKTHGEDEVVTETDNFKTCENEMGGDSSSVCSIDNHFDRTSMSDADETVRSETEGREDRHITEIPVVNHQKLHWCEFCELEFDSIESLRIHFRTSDNHKPFICNICNERFQADDDLQTHLKVHSKNNHSLECSVCKEQFRSQRKFKLHQMFHEKDQNYILSTIYKKYAPEAHSNQALVEDKIVRVKTESVSEIEDTENSHFQSQATSICEKITESDESNLIFIKKETDHSVDVNFEIEFETVKHEVKEEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -