Scon001743.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000004.1:2698032-2701830[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 2.5e+02 3.1 0.5 1 23 81 104 81 104 0.80 2 21 2.5e-07 3.2e-05 24.8 0.8 1 23 110 132 110 132 0.98 3 21 0.051 6.4 8.1 0.2 3 23 139 160 138 160 0.95 4 21 0.084 11 7.4 1.4 1 23 165 188 165 188 0.94 5 21 2.8e-07 3.6e-05 24.6 0.4 3 23 197 218 195 218 0.94 6 21 0.66 82 4.6 1.6 1 13 224 236 224 238 0.87 7 21 1.1e-05 0.0014 19.6 2.2 1 23 466 489 466 489 0.97 8 21 0.00016 0.02 16.0 4.3 1 23 495 518 495 518 0.97 9 21 5.9e-05 0.0074 17.3 0.5 3 23 558 579 557 579 0.93 10 21 0.0042 0.52 11.5 3.8 1 23 585 608 585 608 0.97 11 21 0.0004 0.049 14.7 0.2 2 23 713 735 712 735 0.95 12 21 0.066 8.2 7.7 6.3 1 21 741 761 741 764 0.95 13 21 2.6e-05 0.0032 18.4 1.2 1 23 814 837 814 837 0.96 14 21 1.2e-05 0.0014 19.5 1.7 1 23 843 866 843 866 0.98 15 21 0.02 2.4 9.4 2.3 1 23 880 903 880 903 0.72 16 21 6.8e-06 0.00085 20.3 1.1 1 23 909 932 909 932 0.96 17 21 0.0003 0.038 15.1 4.6 2 23 938 960 938 960 0.95 18 21 5.8e-05 0.0072 17.3 2.0 1 23 965 987 965 987 0.94 19 21 0.0014 0.17 13.0 1.3 2 21 994 1013 993 1016 0.94 20 21 6e-06 0.00075 20.4 0.9 1 23 1022 1044 1022 1044 0.98 21 21 2.1e-06 0.00026 21.9 1.0 1 23 1050 1072 1050 1072 0.98
Sequence Information
- Coding Sequence
- ATGTCTCGTCTAACTTTGAAGAAGATTATCTTTAAATCAATTGGTAGTGTCAACTTCCAACCGAAAATAATCAAAGAAATAAACTTCGTGAATGCTTCAAACAAAAAGAAACAGAAGACTCATATtaagacaaaaaaatcatcaaaaaagttgaaagttCTTACAGTTAATCTTCCGCCAGCATCAGCCGAAAATAATCTTACACCTCCAAAACCTGTAAAGCCACCACCAACATCTGAATTCATTTGTTCAGTCTGCGGTGCTAAGTTCCTTCAAAAAGTAATTCTAAAAACTCACTTTGCTCGCAAACACTCTGAACAATATAACTTTTCTTGTAAAGAATGTGGTAAAAAGTTCAAAGTCAAAGGAGATCTCGCAACTCACATGAGACTTCACCTAGAACCACCTGCAATTTGTGATGCATGTGGAAAAACTTACTTGAACAGTCGCTACCTTTACTTACATCAGAGATATGCCCATTACAAGACTGCATTTCCTTGCTCTCTTTGCAAACGATTTATGGCTACTCAAGAAAACCTAGATCAACACATACATCAGCAACATATGCAAAAAAAGGAGAGAGTGATTTGTGACGAGTGCGGTAAAAGTTTTTCCACCAATGACACTCTTCGGCGACATGTTCGATTTGTACATTTCAAGGTCACAACATACTTGTGCGACATCTGCGATACATCTTTTCCTCGAAGGAAATGTGCAAGTGCAAAGCAAAGGCCAACATCTCTTCTCAGACTACTGGAAAATCTCGAACAGCCTCTCAGAACCACTCAAGCatctaaaactaaatttaacgTCATTTCTACTTTAGTTCCAACATCGAAGCTGTTTCCGACATTAGAGAAAACAGTTCAAAACACAAATTTGGAAAAACAATCAACGAATGTTTGTCGAacacctaaaaaaaaattagaagtcGTTTCTACTTTAGTTCCAACATCAAAGCTGTTTCCAACACTAGAGACAACAGTTCAGAATGCAAATTTGGTAAAACAATCAACAAATGTTTCTCAGACacctaaaaagaaattaaaggtCGTTCGTACTTTTGTTCCAACATCGAAAATGTTCCCAACTTACGCAGTTATGAATCTTAGTGAATTTAAAGATACTTCAAGAGTGGTAATAAGCAGTACAAGTGAACCTGTTGCGGAATCAGATCCACTCTcacttaataattttgaacaacCTGTCGATAATGAAATTAGTATTAAAATAGAATCATTCTTCGTAAACAATTCTGAGTCTTCTATAGATGGTAAAACTGATAACATTGATCAAAGAAATCAATCTCTACAAAATGAAGTGCCAACAGAAATGACGATTAAAAAACCCGACCCTCTGTCTATCGAAAATATAGGCATAGTGACGTCAGGTATGTTCAAGTGTAAAGTTTGcgataaattattcaaacgcAAGGAGACCTTGAAGGTCCATTATATTCGTTTACACTCAGACATTCATCGTTATTCCTGTGACGAATGTGGTGAAagatttaagttattttaccATCTCAATCGTCACAAAAGGCAACGtcatcaaaaagaaaatttaacggaaaatctaaaatcttctgaaaacaGTTTGAATCAAGATTCACAAccgaaaaagaaaacaagaatAAGATATAAAAACTTAGATGAGAGCGATCGGATCtgcaaaatatgtaataaaaagttCGCCAGACCTTATGATCTGAAGCTTCATAATATACGTCTGCACACATGGGAATATAAATATCACTGCGGAAAATGTTCTAAACGGTTTAAGATTGCTAAAGACGTCACCAGTCACATGAAGCGATATCATCCAGGCTCAATCTCAATAGAAGCTAAACGCAATTATAGAAAAAGACAACAAGAATCTGTAAAAGTTCAACAAGAATCTACAGAAGCTCAGCAAGAAATTACAACAGTTGAAGAAGAAGACGatctcgaaattgaaaaacactCCATAGAAATTCAACAGGAATCTGCATATGTTCAACAGGAACCTACAGAAGTTCAGCaagaaattacaaaagttGAACAAGAAAAACAGAATTCAGAAACTCCTTCATCTACTGTAATTGAAGATTCACCtccaaagaaaagaaagcaaATACATAAAAACTTAGAGCTACCTTGTACcatctgtaataaaaaatttggcaGAGTTTACGGTCTGAAGGTCCATTATATTCGTATGCAcacaacagaatttaaatttccctgTGATCTCTGCAGTAAAAAGTTTAAGCTTCTTAAAGATCTTCACAGACACCAAAAGTGCTTTCATTCGAATGAAAATCCAACAAGAACACAACGAAAGTCGAGAAAAAGGCAACAAAAAGATCCAGCTCAACAGGCTGAAGAAGTGGAACAGAATTCGACAGAGACTCTTTCCTCTGCTACAACGAAGCAAAGCCCTAGCAGAAAAGGATTATTTATTTGTGAAGTTTGTGGTAAGATCTGTAcacgcaaggaatctttacAGTTGCATATAACTAGTAGACACAGTGGAGAATTTAACTATACATGTGCAGACTGTGGAAAAGAGTTTAAGACACGGAAAGTTTTATGTGCACACTTAAAACGTGGtcatgacaaaaaaaaagtttcagttgGAAAGGATTCAggtgaattttattgtaccATTTGCGGCATCAAAGTCTTGCGCAGAAGCACTCTCAAAATCCATCATCTTCGTAAGCATACCcatcagtttaaattttcttgtaaatggTGTGGCAAAAACTTCAAAGTTCAAGGAGATCTTACCACTCACACGAGGCTTCGTCATCTAGAACCACCTGCGGTATGCGAGGTTTGCGGCAAGACatgcaaaaataaacattctcTTTATGTACACCAAAAAAACAATCATTTCAAAACCAAATTCTTGTGTGCCGTTTGCAACAAATGTTTCGCTTCTCAAGAAAATCTCGATCAACACATGTTCAAACATGAAAGGAAGGACAGAATAACTTGTGCAGAATGCGGGAATACATTTGCGACTAAATTTACTCTTCAAAGTCATTTACGTTGTGTACATCATGAAGAAAAGACATTTTCTTGTCAGGTTTGTGGAAAATTGTTCCCTTCACAGTCTAGATTGAGGAAGCATCTTCTAACTCACACAGGTAAACGACTTTTTGTGTGTGATATTTGTGGGAAACCATTTAAGCACAAACCTAGTTTAATTAGCCACAGAAAACTTCATCCTGGTGAGCACCCTCCGCTCCCTATTATTCGATTGGATGATGTCCTTAGTGAGTTCATCCAGAAAtag
- Protein Sequence
- MSRLTLKKIIFKSIGSVNFQPKIIKEINFVNASNKKKQKTHIKTKKSSKKLKVLTVNLPPASAENNLTPPKPVKPPPTSEFICSVCGAKFLQKVILKTHFARKHSEQYNFSCKECGKKFKVKGDLATHMRLHLEPPAICDACGKTYLNSRYLYLHQRYAHYKTAFPCSLCKRFMATQENLDQHIHQQHMQKKERVICDECGKSFSTNDTLRRHVRFVHFKVTTYLCDICDTSFPRRKCASAKQRPTSLLRLLENLEQPLRTTQASKTKFNVISTLVPTSKLFPTLEKTVQNTNLEKQSTNVCRTPKKKLEVVSTLVPTSKLFPTLETTVQNANLVKQSTNVSQTPKKKLKVVRTFVPTSKMFPTYAVMNLSEFKDTSRVVISSTSEPVAESDPLSLNNFEQPVDNEISIKIESFFVNNSESSIDGKTDNIDQRNQSLQNEVPTEMTIKKPDPLSIENIGIVTSGMFKCKVCDKLFKRKETLKVHYIRLHSDIHRYSCDECGERFKLFYHLNRHKRQRHQKENLTENLKSSENSLNQDSQPKKKTRIRYKNLDESDRICKICNKKFARPYDLKLHNIRLHTWEYKYHCGKCSKRFKIAKDVTSHMKRYHPGSISIEAKRNYRKRQQESVKVQQESTEAQQEITTVEEEDDLEIEKHSIEIQQESAYVQQEPTEVQQEITKVEQEKQNSETPSSTVIEDSPPKKRKQIHKNLELPCTICNKKFGRVYGLKVHYIRMHTTEFKFPCDLCSKKFKLLKDLHRHQKCFHSNENPTRTQRKSRKRQQKDPAQQAEEVEQNSTETLSSATTKQSPSRKGLFICEVCGKICTRKESLQLHITSRHSGEFNYTCADCGKEFKTRKVLCAHLKRGHDKKKVSVGKDSGEFYCTICGIKVLRRSTLKIHHLRKHTHQFKFSCKWCGKNFKVQGDLTTHTRLRHLEPPAVCEVCGKTCKNKHSLYVHQKNNHFKTKFLCAVCNKCFASQENLDQHMFKHERKDRITCAECGNTFATKFTLQSHLRCVHHEEKTFSCQVCGKLFPSQSRLRKHLLTHTGKRLFVCDICGKPFKHKPSLISHRKLHPGEHPPLPIIRLDDVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -