Basic Information

Insect: Synergus coniferae
Gene Symbol: KRBA2_1
Assembly: GCA_032164275.1
Location: JAUEJJ010000013.1:21032837-21035173[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4e-05 0.005 17.9 5.6 1 23 246 268 246 268 0.98

2 15 7.8e-05 0.0097 16.9 3.0 2 23 274 296 273 296 0.96

3 15 2.2e-05 0.0027 18.7 1.0 2 23 365 386 364 386 0.97

4 15 5.1e-05 0.0064 17.5 2.2 1 23 392 414 392 414 0.96

5 15 0.00026 0.032 15.3 0.1 2 23 421 442 420 442 0.97

6 15 3e-07 3.7e-05 24.5 0.9 1 23 460 482 460 482 0.98

7 15 4.8e-07 6e-05 23.9 1.2 1 23 488 510 488 510 0.98

8 15 1e-05 0.0013 19.7 1.6 1 23 516 538 516 538 0.97

9 15 0.0004 0.049 14.7 0.2 1 23 544 566 544 566 0.99

10 15 0.00014 0.018 16.1 0.2 3 23 574 595 572 595 0.92

11 15 5.5e-05 0.0069 17.4 1.5 1 23 601 623 601 623 0.98

12 15 0.00035 0.044 14.9 4.7 1 23 629 651 629 651 0.98

13 15 2.5e-06 0.00031 21.6 0.3 1 23 657 680 657 680 0.96

14 15 1.3e-05 0.0016 19.4 2.1 3 23 688 708 686 708 0.95

15 15 3.1e-06 0.00038 21.3 5.1 1 23 714 736 714 736 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4e-05	0.005	17.9	5.6	1	23	246	268	246	268	0.98
2	15	7.8e-05	0.0097	16.9	3.0	2	23	274	296	273	296	0.96
3	15	2.2e-05	0.0027	18.7	1.0	2	23	365	386	364	386	0.97
4	15	5.1e-05	0.0064	17.5	2.2	1	23	392	414	392	414	0.96
5	15	0.00026	0.032	15.3	0.1	2	23	421	442	420	442	0.97
6	15	3e-07	3.7e-05	24.5	0.9	1	23	460	482	460	482	0.98
7	15	4.8e-07	6e-05	23.9	1.2	1	23	488	510	488	510	0.98
8	15	1e-05	0.0013	19.7	1.6	1	23	516	538	516	538	0.97
9	15	0.0004	0.049	14.7	0.2	1	23	544	566	544	566	0.99
10	15	0.00014	0.018	16.1	0.2	3	23	574	595	572	595	0.92
11	15	5.5e-05	0.0069	17.4	1.5	1	23	601	623	601	623	0.98
12	15	0.00035	0.044	14.9	4.7	1	23	629	651	629	651	0.98
13	15	2.5e-06	0.00031	21.6	0.3	1	23	657	680	657	680	0.96
14	15	1.3e-05	0.0016	19.4	2.1	3	23	688	708	686	708	0.95
15	15	3.1e-06	0.00038	21.3	5.1	1	23	714	736	714	736	0.99

Sequence Information

Coding Sequence: ATGCAGGCTGAAAATACATCAccttacaaatatttatttgtctACGAAGACAGAACATCAAGATATGTTGTACTTAAAGCCATGAAAAGTAATGACTTCAAAAAAGTAGCAATGCAACTTTTAGAGGTGTTAACAATCATCGGCATTCCTTGTATTTTACAATCTGGAAATGGtagaaattttactgaaaatgtcGTTCAGGAATTGCGTTCGTTGTGGGACGGATTCAATATAATTACAGCAGACGTTCTAAAATTTGCCTCgagtgaaagaaattttaaaagtattattaaatcCTGGATGAGAAAACACCCAAGCAAAACGTGGTTTGAAAGTATTAAGATTGTTCAAGTTTTACAAAACGCAACCTTTCTTTCCAAGGATGGAAAGTTTCCTTACGAATGCCTTTTTCGTAGAAACGTCTATAAGAATTTCCCTCTTAATTGTAACGagaaaagagattttgattatgaagagtttaaaatggaaaacaaAGATCATGATGATACTTCTATTTCTGATGACGATAATCATGAAGATCATAATAATGACGATAATGAAATCAGTGAAGACATATTTCACAAAGAAACTGGTCAAAATAAATCTTCTGTAATTTCTACAGagcatttgaaaacttttaacttCGTtaccataaaaaatgaagaagctCCCGCTGAAGATTCGACTTCGGAAAGCGAAGAAACTTCgcgtataaaattaaaagaaaaacaactACACAAATGTAAAATCTGCCCCAAGAAATACACAAAACTAGGACACTTGACGAATCATCTAAAATCGCACAAAGTAAGTAGTTTAGAGTGCacaaaatgttcaaaaaaattccgtACTCAGACTCTTTATGAGAATCACATGAGTAAATTTCATAAGGAGCAATCTAAAAATCGCAATAGTAAATTTGGCATAGAAATCGAAGATCCTAATCAAAAAGAGAGTCCTGCAAGTAACAATCCGCTAGCGAAGAAGCCCAAGGAAATTTCTTCTGAGAAGGTTTCAAAATCTAAACAACCAActcttcgaaaaaaattaaacctcCGGGAAAAGCAGCTCAAGTCGAACGGCACTTTGTTAAAATGTAGCTACTGCGaacaaaaattcgaattcccGAGTGTTTTGAAAAGACACATTCGTTCGCATACGAACGAAAGACCCTACGTTTGTAGGGTCTGCAACAAAAGCTTCAAGCAGCTCGGACATCTTAGCCAGCATTCTGTAACTCACACAGATTACAGATCTCTGCAATGTGGTCAATGTGGTATCAAATTTGAGTCACTAGATGCTCTCAAGATTCATTCCCAAACCCACCCGAGTGAATCGAATCCAAAGTTAAACCCTAATCTTCCTACGAGTCGTCTTTTCGAATGCGACATctgtaaaaaagtatttaccaCTAAAAGCGTTTTGGAGAGGCATATCTTTACTCATACACACGAAAGAAACTTTGAATGCGAAGTGTGCGGAAAACGTTTCAAGCAATCAGGTCACGTGAAATCTCATATGCTCGTTCACACAGGAGAACGAAAATTCTCCTGCACTATCTGTTCAAAACGTTTTAGTTTGgcaaattctttaaagaaacATATGTACATTCACAATGGAGACAAACCCTACCAATGCGATATTTGTGGTGCAAGATTTctggaaaaaagaaatctgAATGGACATCTAATGACCCACACGAATGAAAAACCATTTGGTTGCAAAATTTGTGGGAAAAGATATACTTTGGCTGATACTTTAAGACGTCACGTGAGTGCTGCTCACGAAGATGGAAGAACATATCAGTGTGAACTATGTGCGAAGATGTTTAAGCAACTGGCACATTTATCAGTTCATAAAAAAGTCCATAATGATGAGAGACCTTTCCAATGCCACCTTTGCGAGAAGAACTTTAAACATAAGAATGTTTTGAAGTCTCATTTGGCTATTCATGCAAATGTCAGGCCTTTTGAATGCAATGAGTGTAAAGCTACTTTTGTTAGAAAGACGAATTTACAGACTCATATTGCTTCAGCGCATATGAATGAGAGACCTCACCTTTGTACTATTTGTGGGAAAAAGTTCAAACAAGTCAGTCATCTGAATGGGCACATTATTGTTCACAGCAATTCTATGCCTTATCAGTGTAATTTCTGTGATCGGAGGTGTAACAGGTTGGATAATCTGAAAAAACATATGCGGCTTCACACGAAAGTAAATACAAGTGATACATGTGTTAAAAAGGTCGAGGAAAATATCGTTAGGACTGAAATTATCCCGATGATTTGTAAAGAAGTTCCAGTTGAAGGCTTccataattttcgtaaaaaaatttaa
Protein Sequence: MQAENTSPYKYLFVYEDRTSRYVVLKAMKSNDFKKVAMQLLEVLTIIGIPCILQSGNGRNFTENVVQELRSLWDGFNIITADVLKFASSERNFKSIIKSWMRKHPSKTWFESIKIVQVLQNATFLSKDGKFPYECLFRRNVYKNFPLNCNEKRDFDYEEFKMENKDHDDTSISDDDNHEDHNNDDNEISEDIFHKETGQNKSSVISTEHLKTFNFVTIKNEEAPAEDSTSESEETSRIKLKEKQLHKCKICPKKYTKLGHLTNHLKSHKVSSLECTKCSKKFRTQTLYENHMSKFHKEQSKNRNSKFGIEIEDPNQKESPASNNPLAKKPKEISSEKVSKSKQPTLRKKLNLREKQLKSNGTLLKCSYCEQKFEFPSVLKRHIRSHTNERPYVCRVCNKSFKQLGHLSQHSVTHTDYRSLQCGQCGIKFESLDALKIHSQTHPSESNPKLNPNLPTSRLFECDICKKVFTTKSVLERHIFTHTHERNFECEVCGKRFKQSGHVKSHMLVHTGERKFSCTICSKRFSLANSLKKHMYIHNGDKPYQCDICGARFLEKRNLNGHLMTHTNEKPFGCKICGKRYTLADTLRRHVSAAHEDGRTYQCELCAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECNECKATFVRKTNLQTHIASAHMNERPHLCTICGKKFKQVSHLNGHIIVHSNSMPYQCNFCDRRCNRLDNLKKHMRLHTKVNTSDTCVKKVEENIVRTEIIPMICKEVPVEGFHNFRKKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392197;
90% Identity: iTF_01390521;
80% Identity: -