Basic Information

Insect: Synergus coniferae
Gene Symbol: -
Assembly: GCA_032164275.1
Location: JAUEJJ010000018.1:1693542-1700466[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00013 0.016 16.3 2.2 1 23 441 463 441 463 0.96

2 18 1.8e-05 0.0022 19.0 1.9 1 20 469 488 469 491 0.94

3 18 2.9e-05 0.0036 18.3 0.7 1 23 497 519 497 519 0.98

4 18 7.2e-05 0.0089 17.0 4.4 1 21 525 545 525 547 0.95

5 18 2.2e-05 0.0028 18.7 4.6 1 23 553 575 553 575 0.99

6 18 2.2e-05 0.0028 18.7 5.3 1 23 581 603 581 603 0.97

7 18 8.4e-06 0.0011 20.0 7.1 1 23 609 631 609 631 0.97

8 18 8.2e-08 1e-05 26.3 2.7 1 23 637 659 637 659 0.98

9 18 6.1e-05 0.0076 17.3 6.7 1 23 665 687 665 687 0.97

10 18 1.9e-05 0.0023 18.9 5.8 1 23 693 715 693 715 0.98

11 18 5e-07 6.2e-05 23.8 2.9 1 23 721 743 721 743 0.98

12 18 7.4e-06 0.00093 20.1 7.8 1 23 749 771 749 771 0.98

13 18 2.3e-05 0.0029 18.6 9.1 1 23 777 799 777 799 0.98

14 18 3.1e-05 0.0038 18.2 7.5 1 23 805 827 805 827 0.98

15 18 0.0015 0.18 12.9 8.8 1 21 833 853 833 855 0.94

16 18 1.1e-05 0.0014 19.6 0.4 1 23 861 883 861 883 0.98

17 18 0.027 3.3 8.9 4.5 1 23 893 915 893 915 0.98

18 18 4.3e-07 5.4e-05 24.0 1.3 1 23 921 943 921 943 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00013	0.016	16.3	2.2	1	23	441	463	441	463	0.96
2	18	1.8e-05	0.0022	19.0	1.9	1	20	469	488	469	491	0.94
3	18	2.9e-05	0.0036	18.3	0.7	1	23	497	519	497	519	0.98
4	18	7.2e-05	0.0089	17.0	4.4	1	21	525	545	525	547	0.95
5	18	2.2e-05	0.0028	18.7	4.6	1	23	553	575	553	575	0.99
6	18	2.2e-05	0.0028	18.7	5.3	1	23	581	603	581	603	0.97
7	18	8.4e-06	0.0011	20.0	7.1	1	23	609	631	609	631	0.97
8	18	8.2e-08	1e-05	26.3	2.7	1	23	637	659	637	659	0.98
9	18	6.1e-05	0.0076	17.3	6.7	1	23	665	687	665	687	0.97
10	18	1.9e-05	0.0023	18.9	5.8	1	23	693	715	693	715	0.98
11	18	5e-07	6.2e-05	23.8	2.9	1	23	721	743	721	743	0.98
12	18	7.4e-06	0.00093	20.1	7.8	1	23	749	771	749	771	0.98
13	18	2.3e-05	0.0029	18.6	9.1	1	23	777	799	777	799	0.98
14	18	3.1e-05	0.0038	18.2	7.5	1	23	805	827	805	827	0.98
15	18	0.0015	0.18	12.9	8.8	1	21	833	853	833	855	0.94
16	18	1.1e-05	0.0014	19.6	0.4	1	23	861	883	861	883	0.98
17	18	0.027	3.3	8.9	4.5	1	23	893	915	893	915	0.98
18	18	4.3e-07	5.4e-05	24.0	1.3	1	23	921	943	921	943	0.97

Sequence Information

Coding Sequence: ATGAATAGCGAGCAGCATGCGTTGCCAGCGACTACGCAGGCACAGCAAGAGGAAGTAAATGCAGTTCAAGGCGGTCGTCCTTCGTACCCTGGTGGTTTGGCTACTGCGACCAGTCTTGGAAATGTAGGGAATACCCCGCATTCGTCTGCGGACCTACGTGTAGGTACTGCAGTAGCGTTAGCTTCCTCAGTAGCCAAATATTGGGTCCTCACCAATCTATTTCCTGGACCAATACCCCAGGTCTCAGTTTACCACCATCCCCACCATAACTCCTCGCATAGAGGTGGTGGAGGTGGGGAAGCTCTTTCTAAAGAGTCATCATCCTCACTCAACCAGGAGATGGCCTTGGCCTCCAGTTCCCATCATCAGAACACAGCTTcgcatcatcatcatcaacCTCCTGTTAGTACCAGCAGTCATCACAGTTCGTTGCAGTCCAATACACAGCAGATCCCAGTTTCTCTTCCTGGTTTGAATCTAGACGGGAGTCATATTCCGACGAGTCATTTACAAGCTGCTCATGCTCAGATGCAGCAGCAGATGCAGTCCcaacaacagcaacagcaGTTGCATcagcagcaacagcagcaATCCCAACAGCAACAACAAGCACATCATCAGATGCAGAATCACCAGAATGCCCAGAATAATGCACAAGCTGCGCAGAATCAGAATTCCCAGAGAGACGATAAAGTTAAGGACGAGAGTGGAAGCTGTACAACTGAGCGTTGCAGTGACAATCAGGTACATTGTCAAGTGCAATGTGATCTTCAGTTGCAAGCTCCTCAGGATTTACACCAGAGCCTGatgcagcagcaacaacaacagcaacagATTGGCGTCAATATTACAGGTTCTGGAGGTGGTGACAGTGGAAACCAAAATAATTCCGAGAAAAATTCGGACAAGAAGGAGGATATGAGACAACTTAATATGGCGCAgTTCCAAGTTCCAGATTTAAAACCCGGTGGTCACATGATGGATGTGAGAACAGCTGACGGCTCAGTTGTCAAAATCAGTGCTGGAAACGAACAAGATTTGGTTAAAACATTGGGTGTTGAGATGGTACAAAATATGTACAAGGTGAATGTCGAGGATATTAATCAGCTCTTAGCCTATCATGAAGTTTTCGGAAAGCTACAGAGTGAAATAGCTGCAGGAACAACCTTAGTTGGAGGAACGGTTCCTACGCAGACAGTTACCACAATCCAAAATGGAACTCCTATAGTGCAACAAGTTCAGCTGAATAAATTCGACATCAAGACAAACGACGGAGAAGCTACACCTGGACCTAGTGCCTCTCCTGTGTCAGTGGGAAGCCACAACTGTGATGTTTGTGGAAAGATTTTCCAGTTCCGGTACCAATTGATTGTACATCGCAGGTATCATACGGAGAGAAAACCATTCACGTGTCAGGTCTGTGGAAAAGCTTTCTCGAACGCAAACGATTTAACCCGCCATGGAAAGTGTCATTTAGGAGGATCTATGTTCACTTGCGCGGTGTGCTTCCACGTTTTCGCCAATGCACCATCTTTGGAACGCCATATGAAACGCCATGCCACTGACAAGCCATACAATTGCACAGTGTGTGGCAAAAGCTTTGCTCGGAAGGAGCATCTGGACAATCACACTCGATGCCACACTGGTGAAACGCCATACAGATGTCAATATTGTGCGAAGACCTTCACTCGCAAGGAACATATGGTTAATCATGTCCGCAAACACACTGGCGAAACTCCGCATCGATGCGATATCTGCAAAAAGAGCTTTACGCGAAAAGAACACTTTATGAATCATGTGATGTGGCACACTGGAGAAACACCGCATCACTGCCAAGTTTGTGGAAAAAAGTACACTCGTAAGGAACATCTAGCCAATCACATGCGCTCTCATACCAACGACACTCCCTTTCGTTGCGAGATTTGTGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACAGGCGAAACACCCCATCGCTGTGACTTCTGTTCAAAGACGTTCACGCGAAAGGAGCATCTCCTGAACCACGTTCGACAGCACACTGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAAACACCCTTCCGCTGTCAATACTGTCCGAAAGCTTTTACGCGGAAGGACCATCTGGTGAACCACGTCAGACAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACTAAATCATTCACGCGGAAGGAACACTTGACCAATCACGTGCGTCAACACACAGGCGAGTCACCACATAGGTGCCACTTCTGCTCCAAGTCCTTTACCCGCAAGGAGCACTTGACCAATCATGTTCGCATCCATACTGGTGAATCACCACATAGATGTGAATTCTGTCAGCGGACCTTCACCAGGAAAGAACATCTCAATAATCATCTCCGTCAACATACCGGAGATTCTTCACATTGTTGCAATGTTTGCTCTAAGCCCTTCACTCGAAAGgaaCATCTCGTTAATCATATGCGATGTCACACCGGGGAACGTCCCTTCGTGTGCACCGAATGTGGAAAGAGCTTCCCTTTAAAGGGTAACCTGCTATTCCACATGCGATCCCACAATAAGGGAAGTAATGCGGAAAGACCTTTCCGCTGCGACCTCTGCCCCAAAGATTTCATGTGCAAAGGTCACTTAGTATCTCACAGAAGATCTCACTCCGATGAGCGTCCACACAGTTGTCCCGACTGTGGAAAAACCTTCGTTGAGAAGGGAAATATGTTGAGACATTTGAGGAAGCACGCCGCCGAGGGACCACCAACTCAGGTTAGCACCCCCTCGGCAATTCCACAACCTGGAGTGTTACCTGTTCTTGTTGGACATCCACTGGCGCCACCCGCGCCCTCAGTCGTTCCACAACCTGTCGTCGTACCCACTCCTCCTGGTGTCCTCACCTCTTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVNAVQGGRPSYPGGLATATSLGNVGNTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVSVYHHPHHNSSHRGGGGGEALSKESSSSLNQEMALASSSHHQNTASHHHHQPPVSTSSHHSSLQSNTQQIPVSLPGLNLDGSHIPTSHLQAAHAQMQQQMQSQQQQQQLHQQQQQQSQQQQQAHHQMQNHQNAQNNAQAAQNQNSQRDDKVKDESGSCTTERCSDNQVHCQVQCDLQLQAPQDLHQSLMQQQQQQQQIGVNITGSGGGDSGNQNNSEKNSDKKEDMRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLVKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTNDGEATPGPSASPVSVGSHNCDVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPGVLPVLVGHPLAPPAPSVVPQPVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00200974;
80% Identity: -