Scon017385.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010002524.1:20071-20881[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 0.00022 21.5 0.0 1 34 13 45 13 53 0.92 2 2 5.1 6.4e+03 -2.4 0.0 26 33 139 146 137 148 0.75
Sequence Information
- Coding Sequence
- ATGGGGCAATCGTTCAAACGTCTGAAGCCAAAACGAGATCCAGAAATTCTGCGGCTAGCACTTGCTGCTATAGCATTAGGATTTTCCCCTCGTGCAGCTACACATGAATTTGGAATTCCTCGTTCAACACTACTGTTCCATCAGAGAAATAATAAGATTGTAACTCCTGAAGGAGATGAAACTGAACGACCGACGAAAGTTAATGTCGACAATTTTAAGATTGCGGAGGAAGGTTTCAAAACGGCAGCATTACAGTTTTTTCGTGACAATGGAATTCATGTTCTTTTGTTTTCGCTCCATTGCTCCTACCGCCTTCAGCCACTAGACGTGAGCGTTTTTAAACCCTTCAAAACTGCAATTAACAAGCAATTCGATACATTCATGCGGATAAATCCAGGGCGCCTTGTTCAATTTTATGACATTCCGGTGATGGTATTGCATGCATTAGAGATTGGTGTAAATGAAGTAAACATCAAATCCGGCTTCAGATCGACAGGAATATGGCCAATGGACGCAGATATCTTTcaagaaacaaatttcatgCCAAGGGCTACGACGGATTGA
- Protein Sequence
- MGQSFKRLKPKRDPEILRLALAAIALGFSPRAATHEFGIPRSTLLFHQRNNKIVTPEGDETERPTKVNVDNFKIAEEGFKTAALQFFRDNGIHVLLFSLHCSYRLQPLDVSVFKPFKTAINKQFDTFMRINPGRLVQFYDIPVMVLHALEIGVNEVNIKSGFRSTGIWPMDADIFQETNFMPRATTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -