Scon025272.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010030625.1:879-6117[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-06 0.0013 19.0 0.0 9 39 106 136 101 140 0.91 2 3 7.5 9.5e+03 -3.0 0.3 22 27 179 184 176 185 0.69 3 3 0.32 4e+02 1.4 0.0 16 34 237 255 235 265 0.82
Sequence Information
- Coding Sequence
- ATGCCATACACACGGTTGGTCGTATCGATGTTTGAGGGCCCAAGGACTCTCTCCCACGATATTCCAGGGGATGTAGCATGTTACTCCCAAAAGGATTGCTCCTTTGTTTTGATCCTACGGGCTGTCAACATCTCTGTTTGTCAGAGTCCTTGGACGTCTCAGCAAAGCTCTCTTGTTAACTTTGGTTCAACACTCACGAAAAAGTCGACAATCAGACATGGATGTTATCGTTCGGGGGTCCTGCACTACAAAATGTCTAAAGGACAAAGAATTCAGCATGATCCCCGAGCGTGGTGCCAAACATTTCTTCAGActATTGAACAAATTATCAACGAAAAACTGCCAGTGCATCGCGTCGCAAAGGAATTCAACATCCCCGTTCGGACCTTGGACAGACACTATAAAAAGCTCCCTGGAAAAGCTGATTCTGCTATGAATGACGAACTGAAAAATCTACGTGTTGGATATCAAAAACACAGACAAGTGTTCACGAATGAGCAGGAGAACTGTTTGGTTCGTTACTTGAAGAGAGCTGCAGCGATATATTACGGTCTATTTCCGAAAGAAGTTCGTCAACTCGCTTTtcaatattgcaaaaaaatggaaatccAAATTCCGGAATCCTGGAGGAACAAATTGATGGCAGGCTCGGATTGGTTTACCTCTTTTTTGAAACGGAACCCAGATTTATCTACTAAAACTCCGGAAGCGACCAGCCTCGCACGGGCCTCCAGTTTCAATGAGATAAATGTCTCAACGTTTTTTAACAAACTAAAAGATGTTTATGAAAGACAATTAAGACTTGACAGCCGCTGA
- Protein Sequence
- MPYTRLVVSMFEGPRTLSHDIPGDVACYSQKDCSFVLILRAVNISVCQSPWTSQQSSLVNFGSTLTKKSTIRHGCYRSGVLHYKMSKGQRIQHDPRAWCQTFLQTIEQIINEKLPVHRVAKEFNIPVRTLDRHYKKLPGKADSAMNDELKNLRVGYQKHRQVFTNEQENCLVRYLKRAAAIYYGLFPKEVRQLAFQYCKKMEIQIPESWRNKLMAGSDWFTSFLKRNPDLSTKTPEATSLARASSFNEINVSTFFNKLKDVYERQLRLDSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -