Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1e-07 0.00013 22.2 0.0 3 38 21 56 19 61 0.93

2 3 7.3 9.3e+03 -2.9 0.1 31 37 161 167 160 168 0.85

3 3 5.5 7.1e+03 -2.5 0.0 10 19 182 194 181 195 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1e-07	0.00013	22.2	0.0	3	38	21	56	19	61	0.93
2	3	7.3	9.3e+03	-2.9	0.1	31	37	161	167	160	168	0.85
3	3	5.5	7.1e+03	-2.5	0.0	10	19	182	194	181	195	0.74

Coding Sequence: ATGCCGAAATTGAATGTTTCTCGATACAAGCGAGTCTCCAAAAGGGCCAATTACAATGCGGAGGATATTTCCCTGGCCATTAAAGCCGTAATCGTGGGTTTAGATTCAGTGAGAGTTGCAGCAGATCAATTTAAAGTGCCACGCTCAAGTTTGACGCGGTACATTGAAAAAGTGTCGGAGAAATATAATGACCTTTCCGCTGTCTCCGATGAAGATTTGCTAGAAACTATTACACAATTTGGTGCATACGCTGCATCTACTGAAAAGCACCAAattttttctGCTGAACAAGAGAAAGCGCTCGTCGGGTATGCGAAAAAATGCAGCGATCATTACTACGGACTTAACATAATAGAATTCgcaaaaaaaatggaaatccGGTATCCGTCGAAGTGGGAcgaagaaaaaatgtctgaaCGAGATTGGTATTATGGATTCATGCGACGTCACCAAGAGCTTTCATTGCGCACTCCAGAGCAGACGACTTTACATCGCGTTAAATCGTTTTCTAAGGAGAATGTCCAGATGTTTTTCCACAATCTAGATGCTGTTTATAATTCACCAAACGGACACATGTCCGTAGCCGTTTCTGGGTACGATGTCCTTGCCAAAAGTACCATTACTAGTAAAGGCAGCAATAGAAATGGTGGAAGTAAAGAGCCAGAAATGAGGCTCGACCCTAAAAAGCTTGGGGCCATAAAAGAACCCAAAAAACAAGGCAGACCTTTACTTGGTGAGAATTTTACTGAGAGTAGAAGCGATGAAGACATTGCAGGTGATGAGGATGGGAATGTCTACGAGCCCAATGGAAATCTGCAAGCTATGGATGGAGAAAACTATGAAGTAGTAGAGGAGAATAATGAGGGCGATCAGGTACAAATCGATGAGACTACTAgctataataacaattttatggATATAGATGACATAGAAGATAATCTACCAGTAACAGCAATagaagtttctaaaaataagaatgactCGCTACGCGCCGAAAGGGAAAACAGCGAAAATTCTAACGAATACGACAGTGACGAAAACAtgtga
Protein Sequence: MPKLNVSRYKRVSKRANYNAEDISLAIKAVIVGLDSVRVAADQFKVPRSSLTRYIEKVSEKYNDLSAVSDEDLLETITQFGAYAASTEKHQIFSAEQEKALVGYAKKCSDHYYGLNIIEFAKKMEIRYPSKWDEEKMSERDWYYGFMRRHQELSLRTPEQTTLHRVKSFSKENVQMFFHNLDAVYNSPNGHMSVAVSGYDVLAKSTITSKGSNRNGGSKEPEMRLDPKKLGAIKEPKKQGRPLLGENFTESRSDEDIAGDEDGNVYEPNGNLQAMDGENYEVVEENNEGDQVQIDETTSYNNNFMDIDDIEDNLPVTAIEVSKNKNDSLRAERENSENSNEYDSDENM

Sequence clustering based on sequence similarity using MMseqs2