Scon017584.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- Pogk
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010002981.1:493-2022[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-09 1.1e-05 25.7 0.1 4 39 20 55 17 58 0.93 2 2 9.3 1.2e+04 -3.3 0.1 14 22 141 149 138 149 0.73
Sequence Information
- Coding Sequence
- ATGCCGCATGTTTATAAGCGTAAGCCAGGATCGTCACGAGGGTTATGGGACGCAGCAGATATGGCCGAAGCTATCGTAAAAGTCAAGTCCAAAGTAATGAGCTTAAGAGAGGCTGAACTTACCTACAATGTCCCTCGTTCTACACTCACAAGAAGGATCAGATCAGCGAACAATGATCCAGCTCCCAGTTTTGGACCTCCTAGCTGTATGGGACAGGAGAATGAGCTAAAGTTAGCGACGCACCTGAAAACCATGGCTAAAATGGGATTCCCTCTGGATCGTTTAAGAATTCGTAAACTGGCATTTAAATTCGCGGAGAagctaaaaattaatcatCGATTTAACAAGGAAACCAAGATGGCTGGATATCCTTGGCTTCGTTCTTTTCTTCGTCGAAACCCCGATCTCACTATCCGAAAATCTGAAGGACTATCCATGGCAAGAGCTAAAGGATTATCCAGAAAAGCAGCCCAAAACTTCTACGAGCTTCTTTATAAAGAAATCCAAAAATACGGTTTGCAGAAGAAGCCGCAAAATTTCTCGAACTGCGATGAGTCAGGCTTTCAGCTCATCAACAGCACTGGGCAAGTCATCACAGCCAAAGGAGCAAAAGCTGTCAATCAAATAACGACAGGAGAAAGAGGGGAGACTGTGACAGTTCTAGCATGCTGCACGGCTGAAGGAAGGTTTATGCCACCTACGATTATTTTGAAGGGCAAGAATAAGAAGCCCGAATTCGAAGATGGCTTGCCACCAGGAGCAGTCGTTTATATGAATCAAAAATCGGCCTATATAAACGCTGACCTGTTCCTGCGATGGTTTGAAGAAGAATTTCTGCCACGAAAGGCTCCAGGAAGAAACATCCTAATCTTGGATGGACATGGCAGCCACTGCTCGTCAATCGAACTGCTAGAGTCAGCTGAAGCAAACGATGTCTCACTAATTTGCTTGCCTCCTCACACGACTCACGCACTTCAGCCCCTTGACCGGGCATTTTTCGCTCCTCTGAAAGCCCATTTCAAAGCTGCTACAGGCACTTGGGTTCAACAGCACATCGGGAGACGTATCACTCGATACCAACTTGGACCTTTGCTAAACGCTGCTTGGTGCAAGTCAGCTACTGTTGGAAATGGAACTTCTGGGTTCGCTGCAACTGGAATTTATCCGTTTAACAGAAATGCTATTCCTGACCATTTCTTTGCAGTCTCAGATGCAATGACGACAGAAGACGCTGCGTATTCAGATGAAGAGACTCCGCTAGCACTTCGTTTAAACAACCTTCGAGATCAATCTCAGAGGGAACCTAGAGACACGTCACCCGACTCGGGAGCAGAATCTCCAACATCAGTCCTCAAAAACATGAATCCACTTCCACAACTTTCAGGGCTGAAAGCAAAGAAACGCAATTCGAGTGGAGAAGCGCAACTTCTCACTTCGCGACAAAACCGTAAGAGGCTCcgagagaaaattgaaaagaagagaGATTCGTTGAGAAAAAATCAGTCacgaaaccaaaaaaaaaacaactaa
- Protein Sequence
- MPHVYKRKPGSSRGLWDAADMAEAIVKVKSKVMSLREAELTYNVPRSTLTRRIRSANNDPAPSFGPPSCMGQENELKLATHLKTMAKMGFPLDRLRIRKLAFKFAEKLKINHRFNKETKMAGYPWLRSFLRRNPDLTIRKSEGLSMARAKGLSRKAAQNFYELLYKEIQKYGLQKKPQNFSNCDESGFQLINSTGQVITAKGAKAVNQITTGERGETVTVLACCTAEGRFMPPTIILKGKNKKPEFEDGLPPGAVVYMNQKSAYINADLFLRWFEEEFLPRKAPGRNILILDGHGSHCSSIELLESAEANDVSLICLPPHTTHALQPLDRAFFAPLKAHFKAATGTWVQQHIGRRITRYQLGPLLNAAWCKSATVGNGTSGFAATGIYPFNRNAIPDHFFAVSDAMTTEDAAYSDEETPLALRLNNLRDQSQREPRDTSPDSGAESPTSVLKNMNPLPQLSGLKAKKRNSSGEAQLLTSRQNRKRLREKIEKKRDSLRKNQSRNQKKNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -