Scon001142.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000002.1:1529148-1530959[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-10 5.7e-07 29.8 0.0 2 42 93 133 92 135 0.91
Sequence Information
- Coding Sequence
- ATGAAAAGCGGTTCCCATTCAGAGAAGGTACAAATGATAAATCCAGTTCGAGTTAAACATAGAAATTCTAAAGTAATGCTTCCAGGAAGTTCGtcagttttaaaagaaagtatgCTCGATACAAagccagaaaaaaaaattggaaaagtcaAAGAAGCTGATGTACTCAAAAAACCTTCTATTACAGAAGAAGAGTCCGAAAGTTCCAGTTCGGAAGAAACTGGAAGAAGAATGACTACGAAGAAAGAAGCAGAAAAACCAAAAGTGGCGTGGAATCCAGAGCTGATGCTCTTCGCTGTAAATGCTGTGCGCTCTAAAAAAATGGGATGCAATAGAGCATCAAGAGTTTTCCAAATTCCAAAGagtatacttttaaaatatcttaacgAAGAAATGACTAacgaagaaattattttaccatGCGCGAAGGGGGGTCGGAAGAGAGTCTTCACTCCAGAGCAGGAAGAGgacctaaaaaattatttactatatGTACAGGAAAGGTATTTCGGATTGGCAAAAGAAGAGGTTAAAAGTATCATATTTcagtttacaaaattaaaagtcagCACGACAGCTTTCGGTCCTGCTGGAAATCCTGGTTTTTCTTGGATAAAAGCTTTCCTTAGACGACATAATTCAATAGTTCCTCAGAATCCACGCGAGTTAAGAAAGCATAGTTCcgtttcaaagttttttgctttaataaaGCGGGAAGTTGAAGCAAATCATTATTCcgcaaatatgattttcaacGTGGACGAAACCGCCTTTTCTATAGTGCACTCTAAAAATCCCCAATTTCGACTTATGAAACGACAAGAGCAAGTTCTGCGGGCGAAAAAAGACTCTTATTTGACAGTAATCACGTGCATGGGTGCCGCGGGAAACTTTGTACCACCAATGTTTATTTTCCCGCGACACAAAGCAACATCTGAGTTAATGAGAGGAGCGCCACCTGGAGCTGTCGCAACATGTCACCCTTCAGGTTGGGTGCAATTGGAATTGTTCACCCAGTGGTTTCGTCACTTCCTGCATTCGACTAAACCGTCGAAAAAAAATCCTGCACTTCTAATCCTTGATGGACAACAAAGCCAcacgaaaaatattgaagtgaTCCGATTAGCCCAAGAGAATCACGTTTCCATCATCAGCCTCCCACCACTAACTCTCAACAAACTCCAGCCAGTTTACAAGTCCTTCATGGATCCTCTGAAAACCTTCTACAGCGAGGAAGTCAGGAAATGGATGAATCAGAACCTTCGTCCACTGACTTTGGATGTCGTCGTTGAACTTTTCAGCAAAGCTTATCTGCAAGTTTTAGACTGCAATATTGGAGTCAAAGGATTTCGTGACACGGGAATCATGCCACTCAACCCAGAGATGGTCTCTCAAGACTTTCCGGATTTAAAAGATGAGGATTTAGAGGGTGCGAAAGTAGAGAAGTTCCTCACTCACATGATGGACCACCTTTCGTCTCCGGACGAATTGAATTCCGTGAAGCTGAAACTGAAACCGTCATCGTCTGAGACTTCTGATTCTCAAGAGTATCCTTCTCTACGAGAGGTTTCCAGACTTCCTGTGCCAGAGGAGTGTtctgaagaagatgaagagtCAGATACGGAGTATTCAATTGCGAATGTTAAGTCAGAAATTGAAGTGGAATGTATGTTCTGCAGGCAATTACAGTCGGAAGACTTTAAGGATGAAATGTGGGTACAGTGCAAATCGTGCGACCTATGGTCTCATTACGACTGCGCTGGGTATGACGATGGCGACTACGTTTGCGATTACTGCAAGCTTGATAAGTGA
- Protein Sequence
- MKSGSHSEKVQMINPVRVKHRNSKVMLPGSSSVLKESMLDTKPEKKIGKVKEADVLKKPSITEEESESSSSEETGRRMTTKKEAEKPKVAWNPELMLFAVNAVRSKKMGCNRASRVFQIPKSILLKYLNEEMTNEEIILPCAKGGRKRVFTPEQEEDLKNYLLYVQERYFGLAKEEVKSIIFQFTKLKVSTTAFGPAGNPGFSWIKAFLRRHNSIVPQNPRELRKHSSVSKFFALIKREVEANHYSANMIFNVDETAFSIVHSKNPQFRLMKRQEQVLRAKKDSYLTVITCMGAAGNFVPPMFIFPRHKATSELMRGAPPGAVATCHPSGWVQLELFTQWFRHFLHSTKPSKKNPALLILDGQQSHTKNIEVIRLAQENHVSIISLPPLTLNKLQPVYKSFMDPLKTFYSEEVRKWMNQNLRPLTLDVVVELFSKAYLQVLDCNIGVKGFRDTGIMPLNPEMVSQDFPDLKDEDLEGAKVEKFLTHMMDHLSSPDELNSVKLKLKPSSSETSDSQEYPSLREVSRLPVPEECSEEDEESDTEYSIANVKSEIEVECMFCRQLQSEDFKDEMWVQCKSCDLWSHYDCAGYDDGDYVCDYCKLDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394207;
- 90% Identity
- iTF_01391020;
- 80% Identity
- -