Scon009331.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- bab2_1
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000039.1:3370147-3372073[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-14 5.2e-11 42.7 0.0 1 45 346 391 346 391 0.96
Sequence Information
- Coding Sequence
- aTGGAGACCGAACCTCAGAAGTTCTGTTTGAGGTGGAACAACCATCAATCAAATTTGATCCAATTTTTTGACGAATTACGAAAGAAGGAAGATTTCACTGACGTGACTCTGATGTCGGATGCTAGGGAGATAATAAAATGTCACAAAATAGTGCTGGCTGCCGGTTCCTTTTATTTCGAAAGAGTATTTAACAATGTAGGATTTCAAGATTCAACGACTCTCGTCCTAACTCACACAAATTTTACACTACTTGAGGCCTTAATAATGTATATGTACCGAggagaaataaatatacaacAGGACGAATTATCAGCTTTGTTACAAGTCGCTGAAGAACTTGAGGTCAAAGGTCTTATTAATTTCGCGGAAAAAGGATCAATGACAAAGATCAAGAGAGACGAGGTTCCACCATCGTTTTTGAATCATTCTCCACCACCATCGTCTACACCATCTACAACACCACGTctaaaacttgaaaacagtGCTGGACAACTTGCAAATCCGTTATCACATGcagatttatataatttccatGCAGCCAATCAGAGTATAAATCCAATGCCATCGCATGGACTTTGGTCGATGCCTGCTTTCCCGTTTGCTCAACATCCGTATCATCCTCATTATTCAGCATTGAGTAGATCCTATGTCCATAGTTCTGATACGTCACCCCTgacgaagaaaaagaagatttcTTCGGCATCAATGGCTATTACGCCTACGGCTACTCCCATTTTACGGACGGCACTTGTTGGCCAAGAAGTCGAAACAGCACACTCCACATCGGGATCGAACTtggaaaatatggaaaatggAACTCGAAGCAATGGTTCAGCCAATGGTTCTGCCAGTGGTTCTGCCACTTCTCCCATTGATAACAGCAGAAGATACAGCACGGACTTTTCTCATCATGAAGACCCTGCGAGTCCTCACACCGATATAGAAGATgatgttagaaaaaattctacatcACgacGCAACAGTTATGCCTCGAGCTCAACAGCTCCCAGAGAGTGGAAGCGTTACAAGCAGTACACTCGGGAGGACATCAACGCTGCCATCGATGTGGTCAGATCAGGAGAAATGAGTGCCCTCAGAGCATCTCGAAAATTCAACGTGCCATCTCGCACGCTGTATGATAAGGTAAAGAAATTGGGAATTAAAACTCAACGAAACTCAGGACGACAACCATCCAGACAAGGAAACGGAAACGTAAACGGAATCAGAATCCGTAGCATCGATAATGACAGTGCTCGTTTCCCGTATGGCGTGGGAGGCAATGCTGATGGTAATATTTATCGAAATGCGTATGGAGCAGTTGAGCCGATGGACATGTTAATGAATATGAAACACATCAGCCCGAGCACAAGTCCGAAACCTGAGCCTCATATTGAGGATGAtgatagttttgaaaatatggtGGAAGATTTGTCCATCAAACCCCCAGTACAAAATAGCGTCACTATTCGTCCCGTAACTCCTAAAGAGGAATTGAAAGACGAAACACCTGCGCCAAGCGAGAACTGTAACTCGtga
- Protein Sequence
- METEPQKFCLRWNNHQSNLIQFFDELRKKEDFTDVTLMSDAREIIKCHKIVLAAGSFYFERVFNNVGFQDSTTLVLTHTNFTLLEALIMYMYRGEINIQQDELSALLQVAEELEVKGLINFAEKGSMTKIKRDEVPPSFLNHSPPPSSTPSTTPRLKLENSAGQLANPLSHADLYNFHAANQSINPMPSHGLWSMPAFPFAQHPYHPHYSALSRSYVHSSDTSPLTKKKKISSASMAITPTATPILRTALVGQEVETAHSTSGSNLENMENGTRSNGSANGSASGSATSPIDNSRRYSTDFSHHEDPASPHTDIEDDVRKNSTSRRNSYASSSTAPREWKRYKQYTREDINAAIDVVRSGEMSALRASRKFNVPSRTLYDKVKKLGIKTQRNSGRQPSRQGNGNVNGIRIRSIDNDSARFPYGVGGNADGNIYRNAYGAVEPMDMLMNMKHISPSTSPKPEPHIEDDDSFENMVEDLSIKPPVQNSVTIRPVTPKEELKDETPAPSENCNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391333;
- 90% Identity
- iTF_01393682;
- 80% Identity
- iTF_01389597;