Stip015885.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:3362608-3375681[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.6 3.2e+02 2.3 0.3 3 23 279 300 278 300 0.91 2 16 1.7 98 4.0 2.1 1 23 325 348 325 348 0.86 3 16 0.00042 0.025 15.3 2.0 1 23 370 392 370 392 0.97 4 16 0.0054 0.32 11.8 0.5 1 23 396 419 396 419 0.98 5 16 0.017 0.97 10.3 0.6 2 22 425 445 424 445 0.95 6 16 1.1 66 4.5 2.6 1 23 452 475 452 475 0.96 7 16 0.012 0.67 10.8 1.3 1 23 482 504 482 505 0.95 8 16 0.027 1.6 9.6 0.6 2 17 511 526 510 527 0.92 9 16 0.15 8.9 7.3 4.8 2 23 562 584 561 584 0.93 10 16 0.83 48 4.9 1.1 3 23 610 631 608 631 0.95 11 16 0.0024 0.14 12.9 0.2 1 23 653 675 653 675 0.93 12 16 0.2 12 6.9 0.2 1 23 679 701 679 701 0.94 13 16 0.012 0.68 10.8 1.0 1 21 765 785 765 788 0.79 14 16 0.018 1.1 10.2 2.3 1 23 792 814 792 814 0.98 15 16 3.4e-05 0.002 18.8 0.8 1 23 820 842 820 842 0.96 16 16 0.14 8.3 7.4 3.5 1 23 848 871 848 871 0.96
Sequence Information
- Coding Sequence
- ATGGGGACTAAGAGTATAGATTGGCGACCTGGGCCAACTGTGTGCCGATGTTGTTTAGCCGAAGGTTGCTATAAAGACATTTCTACCGAATACTTTTGGATGGGAAAAAGGGAAGTGTATTCCGAAATGTTGACTGAGACGTTTGATATTAACATTTCCTATTCAACGTCTGGTCCGAATAGCAATAGCCGCTTAATCTGTGAGCCATGCATATCAAGATTGCGAGATGCATGCGAGTTCAAACGTCAGGTACACGAATGCGAGAAGACCTTCATGCAGTATTTGGATCCCGGCGCCTCTTCGACTATGCTGGACACGCAAGTGACCGTTGAAGTTATGGACAGTGAGGTGAAACTAGAACAAGTGAAACAGGAGAAGGCTCACAGCGATGATGATGATGATGACGACTTCGCCGGACCCAATTATCCCGATGATGATGAAGATGATGACGATCTCGACGATCAACCGCTAACAAAGTTCGCAACTCGGATCCCCAAAAAGGAGTCCGTGGACATTCTAGACTTGTTGGACAACGCTAAGGCGGCGGAGAAACGCAAATCGACTACAAAGTCCAAAGCGCCGCCCCCGAAAAAGACGAAAGTGAACCTTAAGGACATACAAATAAAGCCTACAGCAAGCAAAGCGAAATCGTCCTCGACGCAAGGAAAAGTATTGAAAATAACTCCCGCTAAACCGCCGATACAAGTGAAGCCGGTCGCAAAAGTCGTCAAAAAGAAGAAAGGAGAATGGCAAGACCCGGCGAGGGTTAACGCAAAGGCCATCATTAAGTACACGAGCGCTTACCCGTTCCGTGTGAACGATAGATGCATACTGTGCGTCTTCTGTCACGAGCTGTACGACGATCCAGACGTGTTTAGGCGGCACGTTGACAATGAGCACGCGATTGTCGAGGTGAATCTAGTATTTCACGGGCTGCCCAAATCCGAGTTCATTAAGGTGGACCTGACGAATCACCATTGTAGGATTTGCTCGAAAACTTTCGACGGCCTGAACGAATCGGCCGAGCACCTTAACACTCAACACGACAAGAGAATAAATATGGAAGAAAAGTTGGGTCTGATGCCGTACTTCTTAAAGAAGGACGTGTACAACTGCGCAATGTGCGAGAAAAATTTTCCGTCCCTGTTCCACTTGAATAGGCACACCGTGACGCATTTTCTTAGTTACGTTTGCCACGTGTGCGGAAGCAGCTACGTCGCGACCACAGGCCTGTTGCGTCACGTGAGGTCCAAACATCAGGAGTACGAGGTGTCATGCAAGAAGTGTCGCAAGGTTTTCCCGAATATGGAGGCCAAGGAGAAACATAGGCGGACCGAGAAGTCTTGCATGCCGTACTGCTGTCCAAAGTGTATGGAGAGATTCCTCGATTGGCGGTCGAGGACTCGCCACATGGAGAGCCAGCACGGGCAGACTAGGAAGTCGTACAAGTGCGTTGACTGCGACGTGACATTTCCCAACGAGAACGCGTATTACGACCACTTTAAGTTGCATCACTCAAAGTCGACGGTCTCGTGCAAGTATTGCGGCCTAAAGTTTGTGTCCAAGTATAAGCTGAGGCAACGTAACCGAGAGGATGAGCAGTTGATCATCAGCAAGCAGAATGCGATAACCATCCTCAAATATTCCACTGCGAATCCTTTCCAAACGAAGGCAGGCTACTTGTCGTGTTGCGTTTGCAATGCTCATTTCGACGACCCAACCACGTTCCGCCACCACATGAGTGCGAAACACAAGAGCTTTGACGTCACAAAATTCGTAGAAGACACGAGGAATAGACAAATTCGCGTGGATGTAACGGAGATGCATTGCAAACTATGTTTAGTAATGTTCAATAGTTTGGAAACAATGGCGTCGCATTTGAAAAACGAGCACAAATTTGACATAAATTTCGAGGCCGGTTTAAATCTGGTGCCGGTGAGATTGGAGGCGGACAGATTTGAATGTGTAATTTGCTTCAAGAGGTTTACGGGAATCAGTCAATTGGCGAAACATACGGGAGGTCATTTTGCGCGTTACATGTGCGATGTTTGCGGTAAACGTTGGGAGTCGCCGAATGGAATCGCTGCCCACAGATGTTCCCACGAGTCTGAAGGAATGGTTATGTGTTTGCGTTGCGAAAATTATTTTCCCACCAAAGAGGCAAGGAGGGAGCACTACAACACTAACAAACGTTGTTTGCCGTTTGGCTGCAATGCTTGCAGCGAGAGATTTCTGTCCTGGGAAATAAGGGAAGAGCATTTGAACAATGTCCACGGGAAACCCAAGAAGACGTTCAGTTGCAAGGAGTGCGGGAAGGTGTTTGCGAAACCCACGCCACTCTATTTTCATTTCAAGTCTGTGCACACGGAAGATTTCAAATGTCGATACTGTAGCCTAAAATTTCCGACGATTCGCAGGTTGCAAGAGCACACATCTACTCATACAGGTGAAAAGAATTTTATTTGTGCCGTGTGCGATAAGCGTTTCGCTAGGCACAAAAGTCTAAGGGCTCACAGGGCGATCCACGATGATACCAAAAAGCATATTTGTACTATCTGCAAGAAATTGTTTCTTACGCAATACAAGATGAAATTGCACATTAAGAAAGATCATCCGGAAATAAATATTTAA
- Protein Sequence
- MGTKSIDWRPGPTVCRCCLAEGCYKDISTEYFWMGKREVYSEMLTETFDINISYSTSGPNSNSRLICEPCISRLRDACEFKRQVHECEKTFMQYLDPGASSTMLDTQVTVEVMDSEVKLEQVKQEKAHSDDDDDDDFAGPNYPDDDEDDDDLDDQPLTKFATRIPKKESVDILDLLDNAKAAEKRKSTTKSKAPPPKKTKVNLKDIQIKPTASKAKSSSTQGKVLKITPAKPPIQVKPVAKVVKKKKGEWQDPARVNAKAIIKYTSAYPFRVNDRCILCVFCHELYDDPDVFRRHVDNEHAIVEVNLVFHGLPKSEFIKVDLTNHHCRICSKTFDGLNESAEHLNTQHDKRINMEEKLGLMPYFLKKDVYNCAMCEKNFPSLFHLNRHTVTHFLSYVCHVCGSSYVATTGLLRHVRSKHQEYEVSCKKCRKVFPNMEAKEKHRRTEKSCMPYCCPKCMERFLDWRSRTRHMESQHGQTRKSYKCVDCDVTFPNENAYYDHFKLHHSKSTVSCKYCGLKFVSKYKLRQRNREDEQLIISKQNAITILKYSTANPFQTKAGYLSCCVCNAHFDDPTTFRHHMSAKHKSFDVTKFVEDTRNRQIRVDVTEMHCKLCLVMFNSLETMASHLKNEHKFDINFEAGLNLVPVRLEADRFECVICFKRFTGISQLAKHTGGHFARYMCDVCGKRWESPNGIAAHRCSHESEGMVMCLRCENYFPTKEARREHYNTNKRCLPFGCNACSERFLSWEIREEHLNNVHGKPKKTFSCKECGKVFAKPTPLYFHFKSVHTEDFKCRYCSLKFPTIRRLQEHTSTHTGEKNFICAVCDKRFARHKSLRAHRAIHDDTKKHICTICKKLFLTQYKMKLHIKKDHPEINI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -