Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: RREB1
Assembly: GCA_947623395.1
Location: OX392430.1:2148462-2153696[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.2 12 6.9 0.7 1 23 57 80 57 80 0.95

2 12 9.8 5.7e+02 1.6 0.3 1 11 122 132 122 143 0.83

3 12 0.047 2.8 8.9 0.2 1 23 273 295 273 295 0.97

4 12 0.00011 0.0062 17.2 0.5 1 23 304 326 304 326 0.96

5 12 0.00074 0.043 14.6 2.0 1 23 332 355 332 355 0.97

6 12 0.003 0.17 12.6 1.6 1 23 695 718 695 718 0.96

7 12 0.00025 0.014 16.0 1.3 2 23 910 931 909 931 0.97

8 12 0.025 1.5 9.7 5.3 1 23 937 960 937 960 0.97

9 12 0.13 7.4 7.5 0.5 1 23 991 1015 991 1015 0.88

10 12 0.29 17 6.4 0.2 1 23 1039 1062 1039 1062 0.87

11 12 0.023 1.3 9.9 0.3 2 23 1102 1123 1101 1123 0.92

12 12 0.028 1.6 9.6 5.3 1 23 1129 1151 1129 1151 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.2	12	6.9	0.7	1	23	57	80	57	80	0.95
2	12	9.8	5.7e+02	1.6	0.3	1	11	122	132	122	143	0.83
3	12	0.047	2.8	8.9	0.2	1	23	273	295	273	295	0.97
4	12	0.00011	0.0062	17.2	0.5	1	23	304	326	304	326	0.96
5	12	0.00074	0.043	14.6	2.0	1	23	332	355	332	355	0.97
6	12	0.003	0.17	12.6	1.6	1	23	695	718	695	718	0.96
7	12	0.00025	0.014	16.0	1.3	2	23	910	931	909	931	0.97
8	12	0.025	1.5	9.7	5.3	1	23	937	960	937	960	0.97
9	12	0.13	7.4	7.5	0.5	1	23	991	1015	991	1015	0.88
10	12	0.29	17	6.4	0.2	1	23	1039	1062	1039	1062	0.87
11	12	0.023	1.3	9.9	0.3	2	23	1102	1123	1101	1123	0.92
12	12	0.028	1.6	9.6	5.3	1	23	1129	1151	1129	1151	0.97

Sequence Information

Coding Sequence: ATGGATGAAATGGCGGTCGGCGAAAAAGAAACACGCAATAATCGCACAACGAGCATAGACAGCGATAACAGATCCGATAGAAGCGAGGATGACGAAGTCAAAAGGGCGCGCAAAAGGGCAGCTTCCACATCGCCGTATCGAAAGCAGGCCGACAAAAAAATCGCCCGATTCGACTGCTCCAAATGTCGAATGCGTTTCGAATCCGCCACCGCTTATGACATCCATCGATTCACCGCACACAGCGACGAAACCAGAAGCGGCTTTGACGATTTAACCTTCGTCGACTTCTCGAGCAAAAAGTTTCCAGTAATCGCCCAAGGCGCATGTGAACGCAAGCCTCACATTTCAATAACAGACCAGCGATATAGATGCGACCTATGCTCAAGAGATTTTCCGTGTATACAAGCTTTAGATATACATAGGCAGTCGTGCCCTACGTCCTCTAGAGTCTTGAGTCCCGATAGAGACAGACGAGAGGACTTCTTTACGAAATTGGATCTAAGAAATAGGTCGTATACAGGTTTAATTCCCGGCACCCTCACACCACCTATGGAGAGATTCGCACCTAAATACGAGGATAACCATTTCAACAATGGTATTAGACATAACTTAGACTCAGCGAAAGATTTGGCCGATATTCAGTCGATATTAAATGTGACATCAACCAGCAGTCTTCTTGAAAGATTAACGGGATCCCGTGTGGCTATTGAAAATGCTGTGATTACACCGCCTGACTCTGTTATTAAAGAGAGAGAGCCCGAAGAAACTCAGGATAATTTCGCAGCAGAGTTCAGGCGTATGAAACTGCGCGGAGAATTCCCATGCAGGTTATGTTCAGCTAAATTTCCAAATCTCCGAGCTTTGAAGGGTCACAATCGAGTACATCTTACAGGTATAGGGCCTGGCCCATATCTTTGTAATATGTGTCCTCACTCATCAATAGACAAAGCCGCTCTCGTGAGACACATGCGCACACATAATGGAGATCGTCCTTATGAATGCGCTGTCTGCAACTACGCTTTTACAACAAAAGCAAACTGCGAACGTCACTTACGAAATCGGCACGCCAAAATGACGAGAGAAGATGTGAAGCGTTCAATAATTTATCATCCCTCAGAGGATCCTAACAATGATGAAATAAATTCCAAACTTGCAAGAGAAGAAGTGAAAAGGTCCTTATCATTCCACACACCAGAGCCGGAGAGGCGCACAGAGTCAACTGGCCGTGATACCCCGTTATCACATTTCACTCCTCCCTTCATTAATGAAAGACACCCTGTAAATTCTTTAACACCAAAACCTCTGCCAGAAAGTCCAATATTGACGCCTAGGGATGCTGAGCAAATAATTCCAAGGATCAAAGTGAAAGGTTTTAGTCAGTTAAAGCAAATTCCAGAATATCGACCAGAACTTCCATTCAAAGAAAATGAGACTCAAATGGAACACTTCGACGAGGAAGCTCCTGTTGACTTAAGCACATCTGATAACAATTGTGATGTTCTGGATCTTAGTAAAAAGAAGCGTAATGTCGATGATGAGGAACCTCAAGTACCACCGAGGCCAGCCTTTGATACAGCCGCAGTTGCCGCTTCTACCTTCGAAACCCGATTATTATTAGCTCAACAAAGACTTTTCGAGAATTCTATTCCAAAACTCGACCCAACGTATTATGCAACACAACTATCTCAACTATACGCGGGGGGAGTGCCAAGTTTACCTGCCATGGGTATTCCTCCATCTTTTCCCTATTTTATGCAACCATCGTTTTTTCCACATCCTGGTGACTCCAGGGAAATGGTGGAGATAAAGCAGAGAATTCAAAAAGAGATAATTCGTCATTTGAGTATGTCCGGAGGAAGACTGGTAGGCGGCGAACAAGAGTGCCTAACTAAACAAGAACCAGAGGAGGAAGAGCCAAAACCTTTACAACAACCAAGTTCTCCTGTGCCGCCACCCAGTTCTGAATCCCCGAGGCCTTTAAACAATAATCCTACTCCTCAAAGTGATTCCGTAAAGATGGTTATCAAAAATGGGGTTCTTATGCCGAAGCAGAAGCAGAGACGCTACCGCACCGAGCGACCATTTTCTTGTTCTCAGTGTTCGGCCCGATTTACTTTAAGGTCGAACATGGAACGTCATGTGAAACAACAACATCCACAGCACTGGAGTGTAAGGAGACCAACTGCAAGGCCCCCTCCGCCGTATCCATCTAGTGACACTTTACAAGATCGTGTCAAATATGCTCTTTTAGCTCGTCATCTCGAGCGTCCGCCTCACCAAATGGATTGTTCTCCTGTTCGTAGAGATTCGGACGAAGTTGCTGATAATGAGGAGGATGAGGAGGACGCTTTAATTATTGACGAAGAATCTGAGCCCGAACGCAAATCCGAAGAACATAGCGCTGCTCGCCTCGCGGCCGCTGAAATATTGATGGCTTCGCAACAACAAGAACTTACTAAGGATTTTGATCTTAAAATTGCGGGAAACTTGATAAATAAACCTCCTTCTATACCTGTAAAAATTGAAACCGGAACGGATCCTATACAGCCTAATCACGAAGTTGCTGCTGTGCCAATGCGTAGCGATGAAGAAGAAGATGAGGAAGGGTTGATTGCGTCTACTAGCGAGGGCAACAATTCGGGCAGCGACGAAAATAAATCTGAATCTGAGACTGGACCTCTAGCACCTAAAAAGAAATCAGCATACAGCTTGGCACCAAATCGAGTATCATGTCCTTATTGCCATCGTAAATTCCCCTGGTCATCATCTCTCCGGCGTCATGTGTTGACTCACACAGGACAAAAGCCTTTCAAATGTCCACATTGCCCCCTTCTCTTCACTACTAAATCTAATTGCGACCGCCATTTACTCAGAAAACACGGCGGTTCCGCTCGAGCTATCTTGGCGGAACCGTTGCCTGAAACCGTGGCGCCACCACCATCGGAGACTAGAACTGTACCTGAAAGACCTTTCAAATGTGCTTCTTGTCCTACCAGTACATTTTCTTCCTTGGAAACTCTCAAGAGGCATATGGCCGCCCGACACGGTACTGGCGAATCCCAACCATGTTCACCAAATGCAGAAAACGAGGAAACCGCAGAAGGTGGTTTATCATTTAAGTGTCACCTTTGCGAAGCTTCATATAGTGATCGAAATGGAGCCCTTGGACACTTGGCTTCAATCCACGCTGCTGAATACGAACATCTGGTCAGCAAAGGAGCTTTGGAAGCAGCTAGTGACAAAAGCGAGAGTGCTGATGACGACGAGAGGGGCAAGTTTCCGGATCACGCTAACCGAAAGGTCGTGTGCGCGTTCTGTATTCGTCGCTTCTGGTCTGCCGAGGACCTTCGCCGACACATGAGGACGCATTCCGGCGAGAGACCGTTCGCATGCGATCTATGCAGACGTCGCTTCACTCTTAAACACAGTATGCTACGTCACAGGAAGAAGCACAGGGACGAGATAACAGACGATGACGAAGCATCTCCTCCCAACACACCTCCGGAGACCGATTCAGTCAATGGATACAACAGATATCAAGACGAAGATGGTTCCGGCAACGAAGTGCCGAGCAACGTGAACAACAATAACTCACCACCGGCCGCCACATATGACAAGATGCATAAAATCAATGCGGTCACACGCAAATACTCCTCCGAAACTGAAAACGACGCCGAGAATGGCGGCGATCTTATTGGCAAGCTACTTGGCATTCAAGACAAGAGCATTATAAACAAATTGCTTTCATCGCCTGACGAAGCCGCCAAATTCCTCGGAGTACACAAATGA
Protein Sequence: MDEMAVGEKETRNNRTTSIDSDNRSDRSEDDEVKRARKRAASTSPYRKQADKKIARFDCSKCRMRFESATAYDIHRFTAHSDETRSGFDDLTFVDFSSKKFPVIAQGACERKPHISITDQRYRCDLCSRDFPCIQALDIHRQSCPTSSRVLSPDRDRREDFFTKLDLRNRSYTGLIPGTLTPPMERFAPKYEDNHFNNGIRHNLDSAKDLADIQSILNVTSTSSLLERLTGSRVAIENAVITPPDSVIKEREPEETQDNFAAEFRRMKLRGEFPCRLCSAKFPNLRALKGHNRVHLTGIGPGPYLCNMCPHSSIDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKMTREDVKRSIIYHPSEDPNNDEINSKLAREEVKRSLSFHTPEPERRTESTGRDTPLSHFTPPFINERHPVNSLTPKPLPESPILTPRDAEQIIPRIKVKGFSQLKQIPEYRPELPFKENETQMEHFDEEAPVDLSTSDNNCDVLDLSKKKRNVDDEEPQVPPRPAFDTAAVAASTFETRLLLAQQRLFENSIPKLDPTYYATQLSQLYAGGVPSLPAMGIPPSFPYFMQPSFFPHPGDSREMVEIKQRIQKEIIRHLSMSGGRLVGGEQECLTKQEPEEEEPKPLQQPSSPVPPPSSESPRPLNNNPTPQSDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTARPPPPYPSSDTLQDRVKYALLARHLERPPHQMDCSPVRRDSDEVADNEEDEEDALIIDEESEPERKSEEHSAARLAAAEILMASQQQELTKDFDLKIAGNLINKPPSIPVKIETGTDPIQPNHEVAAVPMRSDEEEDEEGLIASTSEGNNSGSDENKSESETGPLAPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPLPETVAPPPSETRTVPERPFKCASCPTSTFSSLETLKRHMAARHGTGESQPCSPNAENEETAEGGLSFKCHLCEASYSDRNGALGHLASIHAAEYEHLVSKGALEAASDKSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDDEASPPNTPPETDSVNGYNRYQDEDGSGNEVPSNVNNNNSPPAATYDKMHKINAVTRKYSSETENDAENGGDLIGKLLGIQDKSIINKLLSSPDEAAKFLGVHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387140;
90% Identity: iTF_01387140; iTF_01387981;
80% Identity: -