Stip019823.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392410.1:273520-280219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.1 5.3e+02 1.7 0.8 3 22 462 481 462 484 0.90 2 12 0.016 0.91 10.4 0.2 2 20 506 524 505 529 0.89 3 12 0.012 0.71 10.7 3.1 1 23 543 566 543 566 0.97 4 12 0.0055 0.32 11.8 2.4 1 23 571 595 571 595 0.91 5 12 0.009 0.53 11.1 0.1 2 21 646 665 645 666 0.94 6 12 3.5e-05 0.002 18.7 0.7 1 23 724 745 724 745 0.98 7 12 0.00012 0.0072 17.0 0.3 1 23 751 774 751 774 0.94 8 12 0.00053 0.031 15.0 1.4 1 20 797 816 797 821 0.92 9 12 0.21 12 6.8 0.5 3 23 828 850 827 850 0.95 10 12 0.00032 0.019 15.7 4.5 1 23 857 879 857 879 0.97 11 12 0.0038 0.22 12.3 2.0 1 20 885 904 885 906 0.94 12 12 0.35 20 6.1 3.4 1 21 916 936 916 939 0.95
Sequence Information
- Coding Sequence
- ATGTTGTCGCCTCGGGATGATGAAGATGACGACAACCACCTCTGCATCAAATGCGATGCCACGATTGTTGGCCTCGATAACTACATACAGCACAGGAAACAGAGATGTCAAAAGGCTAAAACCGTGACCTCGAAAGCAGACATATCATCAGTTGTCTCTTTGGACCCGACTCCCCCCACTTATAATCTCGGCGCAGATGTATTCTTTCAATCGCTCGAGCTCCAGAGCAGCGTGAAGAAGACTTCTCTGACCAGTCTTACACCACCGGTATCTGTACCTAAAAGTATTAAGAAAAACCCACTTGTATTGGCATCTACGTCGAGGCACACGCCACGTATGAGTCCTTTAGAAACTAATCTAAGAGGGGAAGACTGGATCGGAGGTCACAGCTTGAGAATAGGTGACAGTGATGATAACGAAACAAAGCTGATAAATGCTGTTGTAAGTATAAGTGGCGGAGTCAAGAAAGACATACCGACGTCTTCGTATAGCTTAGGATACAACGACTTTAACGCTAATGATGAATCGGAAGAGTCGGACGTATCAGACGAAGATGACGAAGAAGAAGTGGCAAACGTTACAAAATGGAAACCGCCTCATAATCACACAGGTGGAAAATGGAGACTAGCATCGCCTGAACATGAAGAATGGGATTTGAGAGAAGAACAAGAGCATACAGGAGGCAAATGGAAACCATTTTTGCCTGATGTAAATGAACGTGAAGAAGATTATGATGCACCACCACCAGAACACACAAAAGGCAAATGGGTACCAGGCACTCATGAAAAAACTCAAATCATGCAAACCACGATACAAACCAAAGGATCCGTTCAATATTGGTGCGGGGCTTGCAATCGACGTTTAGGCTCTAGAGCAATTTATGAAAAGCATTTAATGTCTAACCTACACATGAGAAAGGTACTCCCGGAAAATGAGTTAGAATTTTCGGGACATCTGGAACCAATGAAAAATATTACTGCAAAGCGAACAACGCGTCCTTCGCGATTCATAAATGACAGTATTTATTCTCAACACAAAAGAAAGAGACCTAAAGTAACAGAATCTAAAATCAATGTAAAGATAGACAAAAAGAAACGCAAGAGAAAACTAATTTTCATTCGTTGTTCTGGATGCAAATCCAGAGTGAGACAATATTTAATGGGAAAACACCTGATATCCCACTATCATTTTCGTAAGGCTACCGAAACTCAAAGTACCGCCTACCGACAACTTATTTTAGACAATATTGACGCCATAGTTCACCAATCACCTTACCAATGCAGTCCCTGCAAGTTTTACACTAACTGGCAGTCATGTTTCATACAACACTGGCTTTCTGAAGAGCACAAGCAAAGAATATCTTTGATTGATGGCCGCCTTTGGTGTTCATTTTGCAAGTTTGAAACTGAATCGTCTCAAGAGATGTTGCAACATATGTCGAGCTCCGATCACACGGAAGTTGTAGCTGTAGTGAATAGATCAATGCCTATCGTAATAAGAAAGAAAACAATATTGCAGTGTGAAGTGTGTCTGAAAGAGTTTCGGTACAATATAGAACTAAAACAACATTCGATCAGCTCAGGACACAAATTGGCTTACTCGGCTTCGGACGATTACCAAGAACTCCATAAATGCCAACTTTGCAACTCTAAGTTCAAATCTTCTTTAACGTTGGCCGCTCATCTTAAATCAAAACATAAACAGAGAGTTCACTTTTGTCTTGTTTGCTCAAAATCTTTCAACTCTTCCGAAGATGCCAAACGTCATCGTCAGACTTCAGAGCACAGAATTAGAAGAAAAATTAATATGAGTGAACGAGGACTGCCCATAAAGGATTTGAGCAAAAAATGTCCTTACTGCACTGAAAATGTAATTTTAAAAAATGTTTTAGAACTAAAAGAACACATTCGTGTTGTGCATTCCAACATTAAAAAGAAATGCCCTAAATGCGGAATGTCGTTCATTCTTTCGCAAGAAGTGTCTCGTCATGTCAGAGCTAACGCGTGTCAATTTGAAGACAATCCTATTACGTCCTCCATCCTTTGGAACTGCAGTCAGTGCCTCTTTAACACAGACTCACAAGCCGAATGCTTTTTCCACGAGACACTACACACGAACCCTATCAAAGAGATCCGAAAAATTGGTGAAGTAGAGAAACTGGTTCTTAAGTATTCTTGTCCAATTTGCTCCAAAGTATATAGAAAAGCCTCTCTTCGTCAACATTTAAGGCAACACACTTTTGAGAGGCCCTTCATCTGCTCTATATGTGGAGCTAATTTCACGAGACAGACGAGTTTAGCTAATCACTCCAAGAACGAGCACAGCACTGATGGTAAAATGACGAAGTTACCAGCAATTGTCGATTCAACCGACGAATGCATAGAAGAATTTGTATGTGGCAGCTGTAAGAAACGTTTTCCAAATAAAGCAAGTCTGACTCGTCACACGGCGGGATGTGTGCATGCGACGAGAGATAAACTTTGCCCTCACGCGCAATGCAGTTATGTGGCCACTTCTTTTGTACAACTTGCTAAACACCGTCGCGTACACGGTGATCGCATCAAACACCATGAGTGCAACCAGTGCTCCTACAAGACAGACCAAGCGAGCCATCTCAAAAGACACATGCTGATGCACAAAGAAATCAAACCCTACTTTTGTCCGCACTGCGACTTTACTTGTGGAAGTTTGGAGAATCTTCGAAAACATGTTCTTCAAGGCGGCCGGCATCTCGGTATGTTTTTGTATCATTGCACATTATGCGAATACAGAACCAATAAAGCTACAGAACTTCGAGCGCATCTTAAGTGTGAACACTCAGACAAATACCAATCACAATCGGCCATCATTGAAGCAGTCAAGATAGTTCTCATGAAGAGGAACGACTGA
- Protein Sequence
- MLSPRDDEDDDNHLCIKCDATIVGLDNYIQHRKQRCQKAKTVTSKADISSVVSLDPTPPTYNLGADVFFQSLELQSSVKKTSLTSLTPPVSVPKSIKKNPLVLASTSRHTPRMSPLETNLRGEDWIGGHSLRIGDSDDNETKLINAVVSISGGVKKDIPTSSYSLGYNDFNANDESEESDVSDEDDEEEVANVTKWKPPHNHTGGKWRLASPEHEEWDLREEQEHTGGKWKPFLPDVNEREEDYDAPPPEHTKGKWVPGTHEKTQIMQTTIQTKGSVQYWCGACNRRLGSRAIYEKHLMSNLHMRKVLPENELEFSGHLEPMKNITAKRTTRPSRFINDSIYSQHKRKRPKVTESKINVKIDKKKRKRKLIFIRCSGCKSRVRQYLMGKHLISHYHFRKATETQSTAYRQLILDNIDAIVHQSPYQCSPCKFYTNWQSCFIQHWLSEEHKQRISLIDGRLWCSFCKFETESSQEMLQHMSSSDHTEVVAVVNRSMPIVIRKKTILQCEVCLKEFRYNIELKQHSISSGHKLAYSASDDYQELHKCQLCNSKFKSSLTLAAHLKSKHKQRVHFCLVCSKSFNSSEDAKRHRQTSEHRIRRKINMSERGLPIKDLSKKCPYCTENVILKNVLELKEHIRVVHSNIKKKCPKCGMSFILSQEVSRHVRANACQFEDNPITSSILWNCSQCLFNTDSQAECFFHETLHTNPIKEIRKIGEVEKLVLKYSCPICSKVYRKASLRQHLRQHTFERPFICSICGANFTRQTSLANHSKNEHSTDGKMTKLPAIVDSTDECIEEFVCGSCKKRFPNKASLTRHTAGCVHATRDKLCPHAQCSYVATSFVQLAKHRRVHGDRIKHHECNQCSYKTDQASHLKRHMLMHKEIKPYFCPHCDFTCGSLENLRKHVLQGGRHLGMFLYHCTLCEYRTNKATELRAHLKCEHSDKYQSQSAIIEAVKIVLMKRND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388064;
- 90% Identity
- iTF_01387125;
- 80% Identity
- -