Stip015021.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- Znf639
- Assembly
- GCA_947623395.1
- Location
- OX392421.1:9980001-9988046[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.067 3.9 8.4 1.1 1 23 225 248 225 248 0.96 2 12 6.1 3.5e+02 2.2 0.4 2 23 256 278 255 278 0.86 3 12 0.091 5.3 8.0 1.5 1 23 282 304 282 304 0.96 4 12 0.3 18 6.3 1.6 1 21 309 329 309 332 0.74 5 12 0.003 0.18 12.6 0.0 1 23 336 359 336 359 0.95 6 12 0.011 0.67 10.8 0.4 2 21 374 393 373 398 0.93 7 12 0.14 8 7.4 3.6 2 23 416 438 416 438 0.91 8 12 5.1 3e+02 2.5 3.3 2 23 453 475 452 475 0.89 9 12 2.2e-05 0.0013 19.3 0.9 1 23 485 508 485 508 0.94 10 12 3.5e-05 0.0021 18.7 3.9 1 23 515 537 515 537 0.98 11 12 1e-05 0.00061 20.4 0.5 3 23 544 565 543 565 0.97 12 12 0.036 2.1 9.2 1.0 1 23 571 594 571 594 0.92
Sequence Information
- Coding Sequence
- ATAACTGAAGAAGAACTCAAATCCATTGATCGCAAGTCTCTTATGCTAGAATCCAATTTGGAGTGTTGTACACAGCCCTTAATTATTTCATTTGACACAGAACCTGATAGAGATTTGACAGTTCAATCAAACCATCACCATCAATCAAAAAAAGGTGATGAACAGGAAGAGATATCTAGCATAATAGAGAAATTTGAAGATTACCATGAATCAAAAATAGGTGATGATCAGGAAGACAGATCTAGCATAACCGAGGAATCTGAAGACGAAACTTTCATTGCTAATTTGATAAATGAATGTGAGGAGACTGAAAAGTTGGAAGCAGATACAGACAAGAAGGAAGTCTCCGATTCAGACAATAAAGATCCAAATAATCAGATGATAAATGTAATTGACAATGAGTGTAATGACAATCTATTACAGATGTTAGACAATTGTGATAACGATGCATTTTTGGAAGAAGTAGATTTAATTGTTGAAAAGCTTAATGATGATGTTAACAAGATCATGAAAACGGGACGGAAAACCAATTTACCAAGGAGTAAAAAGAAAGGCCCAAAACCTAAGATCGATTTGTTGGAGTCTTTGTTTGACATTACCGAATTGACGAGAAGTGAGCAAATAAAGGAGTTTTCGAAGCGAAAGGAGTGTGTCAAATTTTTGAATAGTAAATACAAATGCGAACTCTGCTTTCGAGGCTTCAACTTACGCACCCCTTATGAGACTCATCTCAAGTTGAGTCATGACCCAGGCCTGGGTTCGTCTAAGTGTCCGGTGTGCAACATCATTAAAAAGAATGACACGAGACTGAACGAGCACATAACCAGCCGTCACAGGCGTATTTACAAGTGTAAAATATGCGATTTCGTGTCGCAATCGCGGCAGACGGTAGACAGACACAAGAAGTGGCACGACGGGGCAGTTTACAATTGTAGGTTTTGTGGCAAATCGTTTGACAAAATGATAGGTAAATACACCCACGAGCGTCTTAAACATCCGTCGGAGTTCTTATGCGATTTGTGCGGTTTGCCTTTCGTAAGCGCGGATGGGATCCGAGCGCATAAGAGAATGGCGCATTTTGACCATAAGGAATCTACTGAAGAGGCTGATCCTCAACTCTACTGCGAAGAGTGTAAGATACAATTTGCAACATCAAGCGCCTGGGAAACGCATCTTCAGCACTCGGTCAAACACAATTCGCACAAACTGACCAAAGGCACTCCCACTCCGCAGCCGTGGAATCCCACGTGCCGTCACTGCGGTCTCGTGTGCAAGGATCGAGAGGAACTCGGGTCCCATCATTCGGCCGAACATCGCAAGCGATTCAAGGCTAGTCAGGAACAGCAGTACCCGACGCAGTGTAACTATTGCGACGTGGTAATTACTGACAAAATGCAGCATTACAATCACCACAAGAGTCTCCATTTCCACAAGCCGTACAAGAAAGGGGACTTTGTCTGCGAAACGTGCGGGAAAACATTTCAGACCCAGAGGACGCTGACCTCACACGCGAAGGCGACGCACAATGAGTCGGGGACGCGCTTCGAGTGCGACTATTGCCAAGCGAAATTCAAAACCAAGGTGTGCCTCAACAGGCACATTCAGCGCCATCTCTACCCCGTCAACCTCTGCAGCAACTGCGGGAAGGTCTTAAAGTCCAAGAGCAGCCTAAAGATACACATCAGGAACGCGCACGGTGGCCCTCGCCCTCACGAGTGTCGCTTCTGCCAGAAGACCTTCGTTCGAGGTTCAATATTGAAGGTTCACGTGAACGAGGTGCATTTGGGATTGGCCAAGAAACGCATACGGACAAGGAAGAAAGCAAACTCATAA
- Protein Sequence
- ITEEELKSIDRKSLMLESNLECCTQPLIISFDTEPDRDLTVQSNHHHQSKKGDEQEEISSIIEKFEDYHESKIGDDQEDRSSITEESEDETFIANLINECEETEKLEADTDKKEVSDSDNKDPNNQMINVIDNECNDNLLQMLDNCDNDAFLEEVDLIVEKLNDDVNKIMKTGRKTNLPRSKKKGPKPKIDLLESLFDITELTRSEQIKEFSKRKECVKFLNSKYKCELCFRGFNLRTPYETHLKLSHDPGLGSSKCPVCNIIKKNDTRLNEHITSRHRRIYKCKICDFVSQSRQTVDRHKKWHDGAVYNCRFCGKSFDKMIGKYTHERLKHPSEFLCDLCGLPFVSADGIRAHKRMAHFDHKESTEEADPQLYCEECKIQFATSSAWETHLQHSVKHNSHKLTKGTPTPQPWNPTCRHCGLVCKDREELGSHHSAEHRKRFKASQEQQYPTQCNYCDVVITDKMQHYNHHKSLHFHKPYKKGDFVCETCGKTFQTQRTLTSHAKATHNESGTRFECDYCQAKFKTKVCLNRHIQRHLYPVNLCSNCGKVLKSKSSLKIHIRNAHGGPRPHECRFCQKTFVRGSILKVHVNEVHLGLAKKRIRTRKKANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388960;
- 90% Identity
- -
- 80% Identity
- -