Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392412.1:1770051-1779896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0051 0.3 11.9 0.4 1 23 229 252 229 252 0.98

2 10 0.18 10 7.1 0.4 3 23 269 289 267 289 0.91

3 10 0.0031 0.18 12.6 0.6 2 23 325 347 324 347 0.96

4 10 0.14 7.9 7.4 2.2 2 23 349 371 349 371 0.95

5 10 1.2e-05 0.00067 20.2 1.7 2 23 378 399 377 399 0.96

6 10 0.0027 0.15 12.8 2.6 3 22 410 429 408 433 0.93

7 10 0.0099 0.58 11.0 3.0 1 23 437 460 437 460 0.91

8 10 1.6e-06 9.6e-05 22.9 3.2 1 23 466 489 466 489 0.97

9 10 0.0051 0.3 11.9 4.8 1 23 497 519 497 519 0.97

10 10 0.00024 0.014 16.1 0.2 1 23 525 548 525 548 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0051	0.3	11.9	0.4	1	23	229	252	229	252	0.98
2	10	0.18	10	7.1	0.4	3	23	269	289	267	289	0.91
3	10	0.0031	0.18	12.6	0.6	2	23	325	347	324	347	0.96
4	10	0.14	7.9	7.4	2.2	2	23	349	371	349	371	0.95
5	10	1.2e-05	0.00067	20.2	1.7	2	23	378	399	377	399	0.96
6	10	0.0027	0.15	12.8	2.6	3	22	410	429	408	433	0.93
7	10	0.0099	0.58	11.0	3.0	1	23	437	460	437	460	0.91
8	10	1.6e-06	9.6e-05	22.9	3.2	1	23	466	489	466	489	0.97
9	10	0.0051	0.3	11.9	4.8	1	23	497	519	497	519	0.97
10	10	0.00024	0.014	16.1	0.2	1	23	525	548	525	548	0.96

Sequence Information

Coding Sequence: ATGGATTTAAGAAAGGCACTAAATATTTGTCACACATGTTTAAGTTCAGATCGGCAATTATACCCGCTGTCGAAGTTCCCATCTTTAATTCAACTTAATTTCTTGCTGAAAACAGCCACAGTGTGTTGGGAATGTAGTAATGAAGTACTAAGGTTTTGTAAATTCATAACAAAAGTAATTACAGCACAAAGGAAATTGGCTAATGTCCAACATAATGATGACATATTATGTCTAAGTACTTTGGACATTTCAAAGCAGCAACCTCTCTTTGAATTACAACATATTGATGACCCTCTAACCCTAGAGTTTGACGAAGCCACAAATATTAAGGAAGAAGTATATAGTTCAGACACAGAAACTGCCACGTGCCATGAAGATCCTGAGCAAACAGATAACGCAGAGGAAAATAATGTTGAGGAAAATTTAATCAATGATGATAATGTTGATAAAAAAATGTTTGAGTCACAAACAAACACCAATGTGTATATTAAAACAGAAATAGATAAGGATAACCAAGAAATTACATCTAATAAAAAGCTTAAAACTCTTCTATATGTTGACAACAAATTATCAGAACTGTCTGAAGAAGTGATGAAGAAGATTTTAGTGACGAAATTGACTCACGAAGAAGTACTTAAGAGAAGAGACCAGAAGAGGAGTCGTCGCAAATATCAGAATTCTCTTTACAAATGCGATTTTTGTATTATAGGCTTTATAAATGAGGAATATTTGAATGAACACATGAAGATGAAGCACAGTCATATAGATTATAATAATGTGAACAAACCGGGGGAGCTCACAGATTGCGACATCTGTAAAATGCGCTTCAAGTCGCCAATTGTAGCGCAGAAACATAGCGAGCGTCATTACATGCACTACAAATGTCGATTGTGCGAATATGAAGTGTGCGCTCTACACTGCATTGTGGCGCACTGTAAGGACAAACATGACCGCCAAACAGTCGGACGGACACGTTGTAAACGTTGCTCGAAGGTTTTATCCACCCCTGAGGAGTATTTGGAACATTTGAAAAGAGAACACAGGAGTTGTGAAATATGTGGTTATAAAGTGCAAAGAAATTGTTCGATTAAATATCATATGAGTAAAATGCACTCGCAAAAAGGCAACTTAATCTGCGATCACTGTCCAAAAACCTTTAAGACCAGGTATAGGTTGGAACTGCACATGGTCACTCATGGTGAGAATATAGCAAAGAAACTGTCGCATTGCAACATTTGCAATGTGCAATTTAAAAATATACATAATTATAGAGCACATCTTAGAACAAGTGAGAATCACGTGAAAGGATATCAATGTCCCGAATGCAATAAACATTTTGCTTCGGAAGTTTATGGGAGGAGGCATTATAAATTTTATCATCTAAAGGAATCAGGGCACAAATGCGAGGAGTGTAACAAAATGTTTGTGACAATGTCGAATTTGAAGGTACATCGGCGGATGAAGCACGGACTCTATAGACCAAGAAATCATGAATGCGATGTTTGCGGAAAGAAATTCTATTGTAGTTCGACACTAAAATCACACAAGTTAGTTCACTCGGGGCAGCGACAATACATGTGCTCGGAATGCGGCGACACCTTCAAGCAGTCCGGGGCTTTGTTAACGCACACGAAGTTAGTGCACAGACTTGCAAAGAAGCTTTATAAAAAGCAGAAGATTATCCGTGAATAA
Protein Sequence: MDLRKALNICHTCLSSDRQLYPLSKFPSLIQLNFLLKTATVCWECSNEVLRFCKFITKVITAQRKLANVQHNDDILCLSTLDISKQQPLFELQHIDDPLTLEFDEATNIKEEVYSSDTETATCHEDPEQTDNAEENNVEENLINDDNVDKKMFESQTNTNVYIKTEIDKDNQEITSNKKLKTLLYVDNKLSELSEEVMKKILVTKLTHEEVLKRRDQKRSRRKYQNSLYKCDFCIIGFINEEYLNEHMKMKHSHIDYNNVNKPGELTDCDICKMRFKSPIVAQKHSERHYMHYKCRLCEYEVCALHCIVAHCKDKHDRQTVGRTRCKRCSKVLSTPEEYLEHLKREHRSCEICGYKVQRNCSIKYHMSKMHSQKGNLICDHCPKTFKTRYRLELHMVTHGENIAKKLSHCNICNVQFKNIHNYRAHLRTSENHVKGYQCPECNKHFASEVYGRRHYKFYHLKESGHKCEECNKMFVTMSNLKVHRRMKHGLYRPRNHECDVCGKKFYCSSTLKSHKLVHSGQRQYMCSECGDTFKQSGALLTHTKLVHRLAKKLYKKQKIIRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387947;
90% Identity: iTF_01387947;
80% Identity: -