Stip008938.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392437.1:2323995-2335369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00033 0.019 15.6 0.5 1 23 258 281 258 281 0.96 2 11 0.12 6.9 7.6 2.2 1 23 289 311 289 311 0.96 3 11 0.013 0.77 10.6 3.1 2 23 346 368 345 368 0.90 4 11 0.006 0.35 11.7 1.0 2 21 373 392 373 393 0.92 5 11 0.00096 0.056 14.2 0.7 2 23 409 430 408 430 0.94 6 11 8.1e-05 0.0047 17.6 0.5 1 23 435 457 435 457 0.98 7 11 9.5e-05 0.0055 17.3 5.1 1 21 466 486 466 491 0.94 8 11 0.00045 0.026 15.2 1.8 1 23 499 522 499 522 0.92 9 11 0.04 2.3 9.1 0.6 1 23 528 551 528 551 0.87 10 11 0.022 1.3 9.9 0.4 3 19 564 580 562 581 0.89 11 11 0.0077 0.45 11.4 1.2 1 23 594 617 594 617 0.98
Sequence Information
- Coding Sequence
- ATGAACGAAATCAATATCAACATAGAAGGATACAACGTGAATGGGATATGTGTTGGTTGTTTGAATTATAATCGTAAAATGTTTTACAGTGATAACATAAAAGATTGTTTTAAACTATTAGCTAATATTGATGTACCAGACGGTTTGACGATCCAAGTGTGCTGGGAATGTCTGTCCGCTGTAAGACATGTGGAAGCGTTCCAAAAACAAATTCTAAATTCCTACGATGTTCTCATTAAATACTCCAAGGAGCACACCTTCTTGAATTCACCGTCAGATTTGACGAAACACGCAACACAACGTTTCTCGAAAACGCCCGTCAACCTCGAGGTGTTCTCCGTAGAAGTACAGGAACCGGTGGTCGAATTTGAATCGGCAAAAATAGATGACATTGAAATAAAGAATGAAGTTGAAATTGAATTTGAAAATAATTTTGAAGAGCCGAAAGAGGAGGCTCCGAGTGTTGACGATGACGTTGAGTTCCCCGAAGTGCCTGTAACATACGAAAGTCAGTCGTCCGATGACGATATACAACTGTCCGAGTTGAAATACAAGGAGGAGAAGAAAGAGAAGAAATCTAAGAAAGATAAGAAAAAAGATAGGAAAAGAAAATCTCACAAAGAGACAAACAACACGTCGCCACTAAAGCGCGATCAAAGAAAACTAAAGAATCTATCCGAAGATATAGTGCGACTGCACATCATGAGCGATGAGGAAATGTTGCGAGTCAGATCCGAAGATATCGCCAGTAAGGAGTTTCGAAAATTGAAATACAAATGTGAAGATTGCGTACTGACTTTCAATACGCAAAAGCTGATGATAGATCATATGAATGGTAAACATAAGAAGAAAGGTCCGGACTGCCACCAGTGCGACGTTTGCAAAGCGTACTTTCTGACCAGAGACAATCTGTCCACGCACCGGTCGTTGCATTCGACCGCGTACAGTTGCGTACAGTGCGATTTCAAAACTACCCTCAAAAGGGTCATGCTGAAGCATTGTAGGGTACACAACGCAAACAGTGCGGAATATAAGACTTGCAATACGTGCGGAAGTGTTTTCAGTTCAAAATCAAAACTGTCATATCACAAGGGAATATGTCATCAGGAGAAACCGCAGTGCGATTGTTGCGGAAAAGTATTCGCCAATAAAATGACACTAAAATATCATCTCAAAATCCTACCATTAAACAAAGAGGAAAAGCCCAAGGAGAAATTGTTCCTACCGTGCAAAGGATGCGATAAAATATTTCATTCAAGAAAGAGTTATCGAGCTCACGTCGTGATACACGACGGACTGACGTATCCGTGTCAGATATGCGGCAAGCTGTTCCAGTGGAAGCGGAACCTGGCGAGGCACATGCGCAACCACCGCGAGAAGGACGCCGGTGCGCTGCACGAGTGCAGGGAGTGCGGCAAGAGTTTCTCGAGTCGCGACTGTTACAACAATCACATGAGGCTCAGCAAGAAGCATGTCGACGAGGACGCTTACGTACACGAGTGCAATTATTGTGGCAAGAAATTCGCCACGAAATGGTGTATGGTGGATCACATAGACTGGGACCATCTCAAGACGATCAAGTACCAGTGCAGTTTCTGTTTTAAGGCATTCAAAACGGCGAAAATAATGGTCGCCCACGTGAACAATTTACACCAAGGCAAGAAAAAGGAACCGGAGGGCGAGCACTTGTGCGAAATATGCGGAAAATCATACAAGACGGTGAAACGGCTAAAGGGCCACGTGTGGGCAATGCACACGAACAGATCGACGGCGAAGAGTTTCAAGTGCAAACTGTGCCCGGCGACGTTCACTTGGCAGACTTCGATATACAAACACATGAAGATGATGCACGACAACAAGAAGAAGTACCCAAGAGACACGAGACGCGCTATAGAAGTGCGCGAGGGGGAGAGCGATTGGTCGGCGACGACGCGCTCTCGCTCCTCCGCTTCCTCCGCACGAGACGCGCGAATCCGATCTGTTTCTAACTGCGATCACTCTATCCGATTTCCTAGATTGGACTGTAAGAAATCGGATAATGTAATCGAAGTAATAGCGTGTCGGCGACGACGCGCTCTCGCTCCTCCTCCTCCGCTTCCTCCGCTCCCTCGCTCCTCCGCCCGTAAAACAGGTGGAGGAGCGACGTGCTGCGCATATCCTCTCCACTTTTGCCGAGAGCCGACCAGATACCGCGAAGCGCCGCCACATAACAAGAAACAGGAAGCGTACACAGAACAAGCGAACAGAGCGCAAAGTTTCCAACAAAACTTGTCCACAGTACCACAGAATATCGTCAATAATCTAGTACCAAACATTGTGACGAATATAGTCACCAATGCTTTCGTTTTAGGCGTTTAG
- Protein Sequence
- MNEININIEGYNVNGICVGCLNYNRKMFYSDNIKDCFKLLANIDVPDGLTIQVCWECLSAVRHVEAFQKQILNSYDVLIKYSKEHTFLNSPSDLTKHATQRFSKTPVNLEVFSVEVQEPVVEFESAKIDDIEIKNEVEIEFENNFEEPKEEAPSVDDDVEFPEVPVTYESQSSDDDIQLSELKYKEEKKEKKSKKDKKKDRKRKSHKETNNTSPLKRDQRKLKNLSEDIVRLHIMSDEEMLRVRSEDIASKEFRKLKYKCEDCVLTFNTQKLMIDHMNGKHKKKGPDCHQCDVCKAYFLTRDNLSTHRSLHSTAYSCVQCDFKTTLKRVMLKHCRVHNANSAEYKTCNTCGSVFSSKSKLSYHKGICHQEKPQCDCCGKVFANKMTLKYHLKILPLNKEEKPKEKLFLPCKGCDKIFHSRKSYRAHVVIHDGLTYPCQICGKLFQWKRNLARHMRNHREKDAGALHECRECGKSFSSRDCYNNHMRLSKKHVDEDAYVHECNYCGKKFATKWCMVDHIDWDHLKTIKYQCSFCFKAFKTAKIMVAHVNNLHQGKKKEPEGEHLCEICGKSYKTVKRLKGHVWAMHTNRSTAKSFKCKLCPATFTWQTSIYKHMKMMHDNKKKYPRDTRRAIEVREGESDWSATTRSRSSASSARDARIRSVSNCDHSIRFPRLDCKKSDNVIEVIACRRRRALAPPPPLPPLPRSSARKTGGGATCCAYPLHFCREPTRYREAPPHNKKQEAYTEQANRAQSFQQNLSTVPQNIVNNLVPNIVTNIVTNAFVLGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386177;
- 90% Identity
- -
- 80% Identity
- -