Stip015908.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:3520935-3527061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.29 17 6.4 0.4 1 23 22 45 22 45 0.94 2 10 0.0028 0.17 12.7 3.6 2 23 81 103 81 103 0.95 3 10 0.0014 0.08 13.7 0.2 1 23 130 153 130 153 0.96 4 10 2.5 1.5e+02 3.4 8.1 2 23 160 182 159 182 0.94 5 10 4.6e-05 0.0027 18.3 0.7 2 23 191 213 190 213 0.94 6 10 0.66 39 5.3 0.5 2 16 217 231 216 233 0.90 7 10 0.54 31 5.5 0.2 2 23 244 266 244 266 0.92 8 10 6.3e-07 3.6e-05 24.2 0.8 2 23 273 294 272 294 0.97 9 10 2.1e-06 0.00012 22.6 3.3 1 23 300 322 300 322 0.98 10 10 0.00021 0.012 16.2 0.5 1 23 328 350 328 350 0.98
Sequence Information
- Coding Sequence
- ATGGAGTACTATTTACTCTATGGTAGAGACACAAAATACTACACGACCACAGAAGACAAAAAGTTCAAGTGCATAGAGTGCAGCAAGGAGTACGCGTCGCAACCTTTGATTTCGCAGCATTACAGATTCGTTCACCTGAAACGGAGGCCTAGGGAGAGAAAGTGTCCGAAATGCGATCAAAAAATTGCCGGATACCTGAGGGCTTACCATATGGAGGAATTTCACGGGATTCCCGCTCCGACGTGTGGCGCTTGCGGCAAAAAATTCCGGTTTCCATGTCACGTCATACAACACCAGAGGAAAGTGCACATgagcgaaaagaacgtgcagtATGACCCGTCAGTTGAAGAATATTTCATACAACTACCAATGGAAGAAACGAAGAGATACAGCTGTAAAGCTTGCAAAGTTGCTTACAAACGTATATCGGACCTCAGAAACCACGTAATCAGGGCACATTTGAAAAAGAAATTTATCAGTTGCCACCTATGCTCCGAGAGGTTCATGTATCATTTCCAAAGGAAAAAGCACATGTGCGAAACGCACTCCGCACAAACACCATCACAATTGATATGCGCATTATGCTCAAGGTCATTTAAAAGGAAAAATACCTTATCGGAACACATGCGGGACGAACATATAGAAACGAAATGCGCTCACTGCGACGAAAAGTTACCGAGGAAGAAGTCCCTGTATCATATGCACGAGAATCACGGATTTCCACTGCCCACGTGTGGGATATGCGGTTACAAAACTCTGAAGGAAAGTGGGATAGTAAGacatcagagaaatgtccatttgagggagagaaatatatcttgcagtgtgtgcgagaagaaatttttcactcaatctaacctgcaggatcacatgatcactcacagtagggagaaatcgtttgagtgcaatgtttgcggtaaagcgttttctagaaagaaatgttggaaatcacattacaggatacacacgggagatcggccttttagttgtgcggtgtgcgatgctaaatttgtgcaaagcgctagtctaagatttcacatgaggagacatTAA
- Protein Sequence
- MEYYLLYGRDTKYYTTTEDKKFKCIECSKEYASQPLISQHYRFVHLKRRPRERKCPKCDQKIAGYLRAYHMEEFHGIPAPTCGACGKKFRFPCHVIQHQRKVHMSEKNVQYDPSVEEYFIQLPMEETKRYSCKACKVAYKRISDLRNHVIRAHLKKKFISCHLCSERFMYHFQRKKHMCETHSAQTPSQLICALCSRSFKRKNTLSEHMRDEHIETKCAHCDEKLPRKKSLYHMHENHGFPLPTCGICGYKTLKESGIVRHQRNVHLRERNISCSVCEKKFFTQSNLQDHMITHSREKSFECNVCGKAFSRKKCWKSHYRIHTGDRPFSCAVCDAKFVQSASLRFHMRRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387071;
- 90% Identity
- iTF_01387071;
- 80% Identity
- -