Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392435.1:1178699-1183685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.11 6.6 7.7 3.6 1 23 319 341 319 341 0.97

2 8 0.0036 0.21 12.4 4.8 1 23 382 404 382 405 0.95

3 8 0.017 0.98 10.3 0.0 2 23 411 432 411 432 0.97

4 8 2.8e-06 0.00017 22.1 2.5 1 23 438 460 438 460 0.98

5 8 3.3e-05 0.0019 18.8 0.4 2 23 466 487 465 487 0.97

6 8 2.1e-06 0.00012 22.5 1.3 1 23 496 518 496 518 0.99

7 8 4.6e-05 0.0027 18.3 0.3 1 23 524 547 524 547 0.97

8 8 0.0082 0.48 11.3 3.0 1 23 584 608 584 608 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.11	6.6	7.7	3.6	1	23	319	341	319	341	0.97
2	8	0.0036	0.21	12.4	4.8	1	23	382	404	382	405	0.95
3	8	0.017	0.98	10.3	0.0	2	23	411	432	411	432	0.97
4	8	2.8e-06	0.00017	22.1	2.5	1	23	438	460	438	460	0.98
5	8	3.3e-05	0.0019	18.8	0.4	2	23	466	487	465	487	0.97
6	8	2.1e-06	0.00012	22.5	1.3	1	23	496	518	496	518	0.99
7	8	4.6e-05	0.0027	18.3	0.3	1	23	524	547	524	547	0.97
8	8	0.0082	0.48	11.3	3.0	1	23	584	608	584	608	0.98

Sequence Information

Coding Sequence: ATGTTGCAAAATAACGGCCCTTACGGGCCCAGTGAAACCTCTGTCAACATGGGTGCGCCTTTAAACATGTCACAGTTAAGTGGACAAGGAAATCAGAGTTCTAATTTGAGTAATCGTGAAAAATCTCTCCAACAAACACATGAAACTTCTGTTTCACGATGCGCCGTATTGGATTACAATATTTACAGTAATCCCTCTCCAATTCAACGGCCGCAATCTGATACTTTTACAAACTACAATCCTTCGATTTTCACTAACTATTTTAGTTCTCAAAATCGTGGCGCCCCAAATGGTATAACGCCAATGAGTGCTCAAACCAGCGACAATTCAAATTTTGAATACTTCAAACGAAATAAGAACCCCTTGGATCTTAATGTTAATGACATTCCAAGTGTGTGTAATATGTTACCCTCAAGTAATGTAAATAATATAAATGACGATAATTTAAATAATGTAAATGTAGATAACCTCAATCAAATAAGTGATTTAAGTGTAAATTTCAAATCTCAACTCAAAACTCCAAGGGACATATCGAAGAGAAAAAGCTTAGAAAACACAGTCAAATTAATTGAAGACATACTGATACACACGACTAACAGGAGAATGATGAACGCTAGAAAATCAAAGACAAAATCTACCAAGGATTGTTCAAAATTGGAACACACAAATTCAAAATTAGAAAACAAATTCAAGGATAATGTAGAGAATGTTGCATTCAAACCCAAAGAAGAAGTACGAGTCAAAGATGAATTAATTACAGATGATAATAGTGTAGCCACAGTACAAGTAAAAATGCAAGCAGTTAGTTGGACCGATGCAGACTGCTTTAATCCATACCAAAAGGATTACAATGGTGTAGTACACGACGAAAGAGAATCTAATATTATAGATGTGGACATTGGCATCGAGGAAGCTAAGATCTCTATGCAAAATGGTACTACTCCATCGGGATTCTTCCAGTGTCCCCATTGCGCTCTCCTATTTAAACATCCAAAGAGATTTCTGATTCACACAAAGTGGCACTCGTTCGGTTTGACCAACGAGAGGAGATTGGAACTGGCGAAAGAGAAGAAGTCGATAAGGAATCAGAAGAGAGAAGCGAGGGAGATGGAAAAGATTAATGCGGCCGAAGGAAAAAAGAAGTTTCCATGTAAAGACTGCGACAAGGTGTTTCTCCATAGGAGCACATTGCAAGGACACAAAACGAAACACCATCCGAGCGAGGCTCGTGAGTGCAAGGTGTGCAATGAGAAGATCGCCGGCTGGTCGGCGATGCGGCTCCACATGGCGACTCACACCGCAGACACCGACTTCCAGTGTCCGGAGTGCCCCAAGAAGTTCAAGTTTGCACACTCCCTGATAAAACACAGGGACACTCATCGGGAGAAGACTCAACCGTGCGATAAGTGCGATAAAAAGTTTGGTTCGATTGCACTCCTCAAGTTGCACATGAAGACCCACGAGAGAGCCTTAAGAGGTGCAACATTCAGATGCACATACTGCGGGAAAGGGTTCTTCGAGAGTTACAGCTTGCAGGCTCACGAACGCACGCATAGAAACGAGAGGCCGTTCAAGTGTGACACATGCGGAGCCGACTACGGAACCAATTCGGGCCTCAAGAGACATCTCAAAGTGTCACACAGCACCGAGAAACCGTACGAGTGTTCCGTGTGCCATCGCTGCTTCATATCCGTCTCAATAAGGGACCGTCACCACATAAGGATGCACGGTGATCCGGAAAACTTCAAGTACAAGTGCAACCATTGTCCTAGCAAACAGTACCTGACAGCGAAGGATCTCAGGAAACACATGAGAAAAGCACACTCGAAAAAGTCGAAGAAGAAAAGTGATAGTGATAGCGAATAG
Protein Sequence: MLQNNGPYGPSETSVNMGAPLNMSQLSGQGNQSSNLSNREKSLQQTHETSVSRCAVLDYNIYSNPSPIQRPQSDTFTNYNPSIFTNYFSSQNRGAPNGITPMSAQTSDNSNFEYFKRNKNPLDLNVNDIPSVCNMLPSSNVNNINDDNLNNVNVDNLNQISDLSVNFKSQLKTPRDISKRKSLENTVKLIEDILIHTTNRRMMNARKSKTKSTKDCSKLEHTNSKLENKFKDNVENVAFKPKEEVRVKDELITDDNSVATVQVKMQAVSWTDADCFNPYQKDYNGVVHDERESNIIDVDIGIEEAKISMQNGTTPSGFFQCPHCALLFKHPKRFLIHTKWHSFGLTNERRLELAKEKKSIRNQKREAREMEKINAAEGKKKFPCKDCDKVFLHRSTLQGHKTKHHPSEARECKVCNEKIAGWSAMRLHMATHTADTDFQCPECPKKFKFAHSLIKHRDTHREKTQPCDKCDKKFGSIALLKLHMKTHERALRGATFRCTYCGKGFFESYSLQAHERTHRNERPFKCDTCGADYGTNSGLKRHLKVSHSTEKPYECSVCHRCFISVSIRDRHHIRMHGDPENFKYKCNHCPSKQYLTAKDLRKHMRKAHSKKSKKKSDSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387045; iTF_01387930;
90% Identity: iTF_01387045; iTF_01387930;
80% Identity: -