Stip012326.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392418.1:1682829-1691130[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.009 0.52 11.1 1.2 1 23 337 359 337 359 0.99 2 10 1.4 84 4.2 4.6 2 23 367 389 366 389 0.93 3 10 2.2e-05 0.0013 19.3 0.3 1 23 420 443 420 443 0.98 4 10 0.61 35 5.4 0.0 2 23 448 470 447 470 0.89 5 10 0.017 0.98 10.3 0.3 2 20 483 501 483 503 0.95 6 10 4.7e-05 0.0027 18.3 1.4 3 23 513 533 513 533 0.99 7 10 1.7e-06 9.8e-05 22.9 0.6 2 23 585 606 585 606 0.97 8 10 1e-05 0.00058 20.4 1.4 1 23 614 636 614 636 0.96 9 10 0.0042 0.24 12.2 5.6 1 23 645 668 645 668 0.98 10 10 0.00097 0.056 14.2 0.7 3 23 675 696 673 696 0.94
Sequence Information
- Coding Sequence
- ATGACTGAATTTAAATACTGTGAAGCATGTCTTGTGACGAATGTTAAGATGTATAAAATGAATCCACTCTGGATAATGGAATCTTACACACATATTTTATCCATATCTGGTCGGAAGGTTCTCCAGTGGGGACTTCGGATTGTCAAGCGCAGGTTGGCCACCCACAAGGTGGACAGACAACCTGATAAGCGTTGCGGGTCGACCGTAGAACCAGGCCTCTTCCGACTACTCCTCTTGGAAAATTATGGGGAGCAGTGGACATCTGAGATGTCCACTGACCTGATTTCACCAATTACTATAGAACATATTCAGACAATAGACAGAAATAAGAACAAATTGAAATCTCATTTAGTTCAAACGCAAGTAGAATCATTTGGAACAACATGTATTGAAGACAAAGTTAACAGAATAAATAATAAGAAAGAGTTATGTGAAATAAGAGTATATACGCAAAATAAGCACTTTAAAAATGTTACTACAGAGTTAACTGGTGGACATATTTTAAATGTTCCAAAGAAAAGGGGAAAGTTGAAACTCGAACATGAATATAATAAGAAAAGAGAAGAATTACAAATAAAAACAGAAGAGGATGGGCCGTTGATTACAGTTTTAAGAAAAGATAATAAACTTACAGAAATTGTTAATGATTTTACTCCAGTTATAAATTATAATGATTGCTTAAAAACTGCTCTTAATATAAATCATAAATTCAATTATGATTTTGTCTCAAAAGAAACTCAAAAAGGGACTATACAAAAGGAGAAGTCTAAAAGTATAAAGAGAGAGTATAATACAAATTTCAACATTGAAGAAGCTAGTTTAGATACAGTTAATGAAAAACAAATTAAAACAGAAGTTAATGTAATTAAGAAGTCTAAAAAGAAGGATTTAGTAGATTTTGATACAAATTTCTTTGAAGACTTGGTTATGGTTGAAGAGCTAACCCCGGAAGCCGCAAAAAAGGAGGTTCTATTGAGGAAGGAGTCAAAAAATTACAAGATTTGTCCGTTTAAATGTGAACTGTGTTATCGAGGCTATGAAGGACAAGAAACATTCGATAATCATATGAAGAAACATAGTGAGGAATATGGTGATCAAGAATGTCAGTTCTGCCATTTAAGGTTTCTGAAGTCGTATCTGCTCAACAAACACATAGGCTCCTGTCACAAGCGAAAGTATACGTGCACGATTTGTCCTTATATCTGCTTTGGCATAACTCAAGCAAAATTTCATATAAAACTACACAGGGGTGATAAATATCCATGCAACGATTGCGGAGAACAATTTAGCATGCCCAACAGCCTGGCGATGCATCGGCGCAAAAAGCACGTGGCCCCGTGCGCGTGCGCACTCTGCGGAGACGCGTTCGTAAATGTGCGCGGACTACAAGCGCACCTCGACGCCTTGCACAGGGGACCTCAGGAAAATATAGAAAAGCAAGGACCAAAATGTGACGTATGCGATATTCACTTTGCAACGGACAAAGCCTTTAAGCGACATCTAGTTCTGTCTTCTAGACACAATATAAGCAATGGTTGTGAATACTGCGGTGAAACGTTTCCAAACGAGGATTGTTTGAAGCAGCACAAGAGAGTCCACAAAAGGGAAAGCGCACACAGAGCGTTCAAACCGGGACCTTGCTCCATCTGCTCGAAGTGGATGTCGAAGGAGACGTTGTACGTGTCGCACGTGACAAGCGAACACGCGCAGACGCCTCTCGCCGACCAACTGCGCGCCAACCACAACCACGCGGTCTGTGAGATATGCGGGAAAACCTTCAAGAAAGTGTCGTTGTTAAAGTACCACCAACGCGTGCACGACGCTAAGGGCGTCCGTCCGCACGCGTGCTCGCGTTGCGGACGCACTTACTCGTCCAAGGCGACGCTCACGGCGCATGCGCGGACGCACGACGCTCTCCACCCGCGTACTCCATTCCAGTGCGCGCACTGCCACAAAACCTTCGCCTTCAGGGCGTCAAGAGACAAACACATTAAGACGACTCACCTCGGTATCCGGCACTTGTGTGGGATCTGCGCGAAGGCGTTCCGTTCGCCCAGCGACGTTCGCGTGCACGTCCGCCACGTGCACTTGCGCGAGCCTTGGCCCAAGCGCCAACAGAAGCTCCAACAACACCACTAG
- Protein Sequence
- MTEFKYCEACLVTNVKMYKMNPLWIMESYTHILSISGRKVLQWGLRIVKRRLATHKVDRQPDKRCGSTVEPGLFRLLLLENYGEQWTSEMSTDLISPITIEHIQTIDRNKNKLKSHLVQTQVESFGTTCIEDKVNRINNKKELCEIRVYTQNKHFKNVTTELTGGHILNVPKKRGKLKLEHEYNKKREELQIKTEEDGPLITVLRKDNKLTEIVNDFTPVINYNDCLKTALNINHKFNYDFVSKETQKGTIQKEKSKSIKREYNTNFNIEEASLDTVNEKQIKTEVNVIKKSKKKDLVDFDTNFFEDLVMVEELTPEAAKKEVLLRKESKNYKICPFKCELCYRGYEGQETFDNHMKKHSEEYGDQECQFCHLRFLKSYLLNKHIGSCHKRKYTCTICPYICFGITQAKFHIKLHRGDKYPCNDCGEQFSMPNSLAMHRRKKHVAPCACALCGDAFVNVRGLQAHLDALHRGPQENIEKQGPKCDVCDIHFATDKAFKRHLVLSSRHNISNGCEYCGETFPNEDCLKQHKRVHKRESAHRAFKPGPCSICSKWMSKETLYVSHVTSEHAQTPLADQLRANHNHAVCEICGKTFKKVSLLKYHQRVHDAKGVRPHACSRCGRTYSSKATLTAHARTHDALHPRTPFQCAHCHKTFAFRASRDKHIKTTHLGIRHLCGICAKAFRSPSDVRVHVRHVHLREPWPKRQQKLQQHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -