Stip015803.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- Zfa
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:2551921-2555372[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5 90 4.1 1.1 1 23 71 94 71 94 0.95 2 19 1.8 1e+02 3.9 0.0 3 23 123 144 121 144 0.86 3 19 0.0041 0.24 12.2 0.2 2 23 167 189 166 189 0.95 4 19 0.05 2.9 8.8 0.8 3 23 196 216 195 217 0.96 5 19 2.6 1.5e+02 3.4 0.2 2 23 222 244 221 244 0.89 6 19 0.021 1.2 10.0 1.2 3 23 251 272 250 272 0.96 7 19 0.0061 0.36 11.7 3.4 1 23 276 299 276 299 0.97 8 19 0.011 0.63 10.9 0.7 2 23 306 327 305 327 0.95 9 19 0.008 0.47 11.3 1.2 1 23 371 393 371 393 0.97 10 19 0.009 0.52 11.1 0.9 2 23 418 440 417 440 0.91 11 19 0.054 3.1 8.7 0.7 5 23 464 482 454 482 0.88 12 19 1 58 4.7 0.0 2 23 614 636 613 636 0.88 13 19 0.03 1.7 9.5 0.5 3 23 660 681 659 681 0.95 14 19 0.00056 0.032 14.9 1.5 1 23 686 709 686 709 0.97 15 19 0.064 3.7 8.5 1.6 1 23 714 737 714 737 0.92 16 19 0.014 0.81 10.5 3.4 3 23 744 765 743 765 0.94 17 19 0.0032 0.19 12.5 5.3 1 23 769 792 769 792 0.97 18 19 0.0015 0.085 13.6 0.4 2 23 799 820 798 820 0.96 19 19 0.038 2.2 9.2 1.5 1 23 826 848 826 848 0.94
Sequence Information
- Coding Sequence
- ATGAAGTGTTCCCAAACATCGGCTGCTAAAACATTGAATTTTACGACCAATAACTTGGATCTAGAAATTGAATCGGCCCAAGAATTTGCGAAGGTAAAACAATCTGTCCTCTTTCAGGAGAGTAAGAGGATTGCCAGGAAAAACAGGGAAAATATAGCGTGTATTCTAAACATGACTACCGCAATACCTTTCAAGTTTTACAGAAACAATTTCCGTTGCTTCTACTGTCTCAAAGAAATGAACGGGCACAAATCTTTGGAAGCTCACACGCTTGTAGTACATCCGTATTTCAACATAGACGACAAATGTCCTTCATATCTCAAAGGAGTTGATATATATTTAAAACTAGACATATCTAAACTAGCGTGTAAAGTTTGCTCGCAACCTTTCGACGATTTAAACGCGATCGTTGATCACCTAATTGATAAACACGATGCCAAGTATGACAAGGGTATAAAAGGCGTCATGCAAGGATTCAAGTTGGACGAGTACAACATGGTATGTCCTATATGTGCACAAAAGTATACATATTTCAGTCAGCTATTGGCCCATTTGAACCAAAAGCATATGCCTAAAAACAACCTCTGTGAGGATTGCGGTGATAGGTTTCCTTCAAAAAATGTACTCGATATGCATATTAAGAGGCATCATGGAGTAGTACTCAAGTGTGAAGAGTGCGGTGTTGAAATGAGGGGTAAAATGCAAATGATGAATCATAAGGCGAAAGAGCATGGTATAAAACAAGTCGCGTGTAGATATTGCAAAGAAAAGTTTGGCTCCCATTACGAAATGATGAAACATTTAATCTCAGCCCACAATGTTGGGCATAAATGTTCCCAATGCGATAGAGTATTCGTAAAAGATTCTTTTAAAAGAAATCACATTAGACGGGTACACATGAGGGAGAAAAACGTCGAATGCAAGGTGTGCGGTTTGAAATTTTTCGACAACACACGATTGAAGATGCACTTTGTGACGCATAGCGGTCAAAAAAATTTCGATTATGAAACACGACAGAAAGCGGACAGCAATATAACTGCGCTGCGTCGAAACCTTCAAACGTTGTTTAACAACACATCTGTCATACCTTTTGAGTGGAGGGATTTGCATTACATTTGCTTTTATTGCGATCAGAAACTACCCTCTTACGATACACTTCGACAACACACTAAGGATCATGGAGGAAATAGTCAAAGTTATCTAAAAAGCGTAGAAATTAATTTTGTCGTGAAAGTGGACGTTTCTTTTTTGAATTGTCAAATTTGTAATACGAAGTTTGTCAGTACAGACACGTTAATTGATCATTTGATTGATTGTCACGGTTTGCCATGTGATAAAAGAATAATTGATAATATTAATCAATGCAATCTTAAAACTCTAAGTTGCATCACGTGCGGTGTAAATTTCGCTAGTATTACAAATCTCATGAGTCACATGGTAAAACACAGTAAGTTAGATAAGAAATGTAATGAAGAAGCAAAAGTTAAATTTATAAATATAAAAAGAGAACGCAAAGCAACAGAATCAAAAGAAATAATTAACGTTAATAAAGAAGGCAAAAGTAAAAAAATAAAAATTAAAGGTGGTCAAAAAGAAATGAGAGAGAATGCAGTAAAAATGAGAGAAAATATATCTCTTTTATTAAATTCGTCCACAGTTACACCGTTCAAGTATTATATGAATAGATTTCGGTGTTTTTATTGCGGACTGGACGATGTTCATTACGAGATTGTTAAGAATCACACAAAACTTAAACACACTTACTGCGATCCTTCCGAGAAATACATGAAAAAATTGAGAGGAAAAGATGTCAACATAAAATTGGATGTCGCTGATGTAACTTGTAAGATATGCGGGATCTCTCTTGACGATTTAAATATTTTAATCGATCATTTGATATCGGTACACGGAGAAAGCTACGATAAGTCAATCACTCGTGTACTGATAACTTTTAAAATGGTTAAAAACGGTACACTATGTCCGGTGTGTCAGATGTCTTTTCAATATTTTGGCAAGTTACTAAAACATTTGAACGATTTTCACTCGGATAACAATTTTGTTTGCGTGCATTGTGGACAGACGTTTAGAAACGGCCCCAACTATAGGGGTCACATGTCTCGTTACCACAGAATCGAAGCGTGCAAATGTCCCGAATGTTTTCTAGATTTTCCTAATCACGCCAAGTTGGCAATCCACCGAGCAAATAACCATAAAGTTAAATCGAAAAATTGTACGAAATGTAAAGAGAAATTTATCACTCAGTATCACAAACAAAAACATTTGCTTGAGGTTCACGGTGTTGGCCATAAGTGTTTATACTGCAACAGAGTTTTTGTAAGCAATTTTCACATGCTCGAACATACTAGAAAGTTACATTTTAAAGAGAAGAAACAAGAGTGCTCTGTGTGCAGCGAGAGGTTCTTCAACGTGTCTCTTTTAAAAATCCATATGGTGAAGCATATTGGGCAGAGAAATTTTCATTGCGATGTGTGTGGAAAAACATTTCTGTGGAAGAAGAATCTCGTAGGGCACTTGAAATCTCATAACCGAAGTTTAAAGTAA
- Protein Sequence
- MKCSQTSAAKTLNFTTNNLDLEIESAQEFAKVKQSVLFQESKRIARKNRENIACILNMTTAIPFKFYRNNFRCFYCLKEMNGHKSLEAHTLVVHPYFNIDDKCPSYLKGVDIYLKLDISKLACKVCSQPFDDLNAIVDHLIDKHDAKYDKGIKGVMQGFKLDEYNMVCPICAQKYTYFSQLLAHLNQKHMPKNNLCEDCGDRFPSKNVLDMHIKRHHGVVLKCEECGVEMRGKMQMMNHKAKEHGIKQVACRYCKEKFGSHYEMMKHLISAHNVGHKCSQCDRVFVKDSFKRNHIRRVHMREKNVECKVCGLKFFDNTRLKMHFVTHSGQKNFDYETRQKADSNITALRRNLQTLFNNTSVIPFEWRDLHYICFYCDQKLPSYDTLRQHTKDHGGNSQSYLKSVEINFVVKVDVSFLNCQICNTKFVSTDTLIDHLIDCHGLPCDKRIIDNINQCNLKTLSCITCGVNFASITNLMSHMVKHSKLDKKCNEEAKVKFINIKRERKATESKEIINVNKEGKSKKIKIKGGQKEMRENAVKMRENISLLLNSSTVTPFKYYMNRFRCFYCGLDDVHYEIVKNHTKLKHTYCDPSEKYMKKLRGKDVNIKLDVADVTCKICGISLDDLNILIDHLISVHGESYDKSITRVLITFKMVKNGTLCPVCQMSFQYFGKLLKHLNDFHSDNNFVCVHCGQTFRNGPNYRGHMSRYHRIEACKCPECFLDFPNHAKLAIHRANNHKVKSKNCTKCKEKFITQYHKQKHLLEVHGVGHKCLYCNRVFVSNFHMLEHTRKLHFKEKKQECSVCSERFFNVSLLKIHMVKHIGQRNFHCDVCGKTFLWKKNLVGHLKSHNRSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -