Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392420.1:1839730-1847342[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.3 3.7e+02 2.2 0.1 1 23 85 108 85 108 0.91

2 18 1.5 85 4.2 0.1 2 23 112 133 111 133 0.93

3 18 0.22 13 6.8 0.2 2 23 137 159 136 159 0.94

4 18 0.012 0.72 10.7 0.4 1 20 426 445 426 447 0.94

5 18 0.19 11 6.9 0.8 3 23 458 478 457 478 0.96

6 18 0.4 23 5.9 0.6 1 23 494 517 494 517 0.93

7 18 0.00039 0.023 15.4 1.9 1 23 526 549 526 549 0.96

8 18 2.3 1.4e+02 3.5 0.5 2 23 562 584 561 584 0.91

9 18 0.41 24 5.9 0.6 3 22 628 647 628 649 0.81

10 18 5.3e-05 0.0031 18.1 1.9 1 23 683 705 683 705 0.96

11 18 1e-05 0.00059 20.4 2.4 1 23 712 734 712 734 0.98

12 18 9.8e-05 0.0057 17.3 2.3 1 23 739 761 739 761 0.96

13 18 0.0018 0.11 13.3 6.0 1 23 767 789 767 789 0.98

14 18 1.1e-06 6.1e-05 23.5 1.7 1 23 795 817 795 817 0.98

15 18 0.013 0.78 10.6 1.8 2 23 824 845 824 845 0.97

16 18 0.001 0.06 14.1 0.4 2 23 852 874 851 874 0.97

17 18 0.0013 0.075 13.8 0.3 1 23 879 901 879 901 0.98

18 18 0.0098 0.57 11.0 0.7 1 23 907 930 907 930 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.3	3.7e+02	2.2	0.1	1	23	85	108	85	108	0.91
2	18	1.5	85	4.2	0.1	2	23	112	133	111	133	0.93
3	18	0.22	13	6.8	0.2	2	23	137	159	136	159	0.94
4	18	0.012	0.72	10.7	0.4	1	20	426	445	426	447	0.94
5	18	0.19	11	6.9	0.8	3	23	458	478	457	478	0.96
6	18	0.4	23	5.9	0.6	1	23	494	517	494	517	0.93
7	18	0.00039	0.023	15.4	1.9	1	23	526	549	526	549	0.96
8	18	2.3	1.4e+02	3.5	0.5	2	23	562	584	561	584	0.91
9	18	0.41	24	5.9	0.6	3	22	628	647	628	649	0.81
10	18	5.3e-05	0.0031	18.1	1.9	1	23	683	705	683	705	0.96
11	18	1e-05	0.00059	20.4	2.4	1	23	712	734	712	734	0.98
12	18	9.8e-05	0.0057	17.3	2.3	1	23	739	761	739	761	0.96
13	18	0.0018	0.11	13.3	6.0	1	23	767	789	767	789	0.98
14	18	1.1e-06	6.1e-05	23.5	1.7	1	23	795	817	795	817	0.98
15	18	0.013	0.78	10.6	1.8	2	23	824	845	824	845	0.97
16	18	0.001	0.06	14.1	0.4	2	23	852	874	851	874	0.97
17	18	0.0013	0.075	13.8	0.3	1	23	879	901	879	901	0.98
18	18	0.0098	0.57	11.0	0.7	1	23	907	930	907	930	0.94

Sequence Information

Coding Sequence: ATGACTTCAGACGATTCTGACGATGAACCTCTTTCGGTATTAGCTGCAGCGAAGAAGAACACTCCTGAAAAGTTTGTTGATATTTCCCCTCTTAGAGTAAGGAAATCAAAGAAAAAAAGAAAATTAGACGCGAAAAAGCCGTCGCTTACTATTAAATTAAATCTACATTCCAAGAAATTTGCGCCTGCAGCAGTTGTAGAAAGACCGGTTGACGTATGGTTATATTTAAAAGACCTCAACTTGACCGGCCCATATAGTTGTTTGTTATGCTCGGAATGGTTTATAAATAGATCGAAAATTATTGTTCACTATGTTATAAACCACAAAAAGGATTACTGCGGAATTTGTAGATATTTTGTGTCAGATAGAGAAGCATGGATCGCACATGGAAAGTTCCACACCCCGTGGCCTTGTTCGCAGTGCATTGAAAACTTTGAAACAGAACAAGATCTTCGACAGCATTTGAGTAAGAATCACAAGTTGGTTCATTGTCGCCTATGTCATTTTAGGGTCCCCGACGATGAGCAGTACCACACGCATCTTTTACAGAAACACAGTGTACACAATGTGTCAAATAAAGATCGAGAGTCACTGTGGGATGTAGAATATGAGGGCAGCAACAAACTTCTTTGTTTGCTTTGCTCCAAATCAAATATTTTATTGACTAATTTTTTCAGTCACTACATGGGCTATCATCATATTACCATAAAGTGTTTGACTAACATTATATCAGGGAAAGATCAACCTTTCAATATTTATGGTGCCGATGTTAGGCCTGAGTTTATAGAAGATCAATTGAAATCACACGGAAGATATGGTTATGTAGACTTAGATATAAAACCTACAGACTTAGATGAATCTGTCAAGATTGATGACATTCCAGCAAAGGTTGAAGACAGTTTGACAGAACATCTGACGGTGGAAATTAAACAAGAGGTTTTAAGCGATGATGAAAAGAACGATGAGCTTGAAACTAGTGATGACATCAAGAAGGATGAGGATGATATCACAAACACTTACAAAGGAGAGGAGGACTTTGATATGACTTCGGTGGAAATAGTTCTCCTGAACAAATGCTACTTTGATTATGTGAATGGAATTTTAAATGATATAAAGTCCAATCTTATGCCTTTGAAATCGGAGATAAATTATGATTCTTTCAAAGAAGATCCAGCCATGGATGTGTTATGTTCTATTTGTAAAACTATACAAAATAGTGTAGCCAATTTCATTATGCACATGTTTAAAATGCATAGTATTAAGTCAATTCCGGTCTTCTGTTGTAGAGTTTGTGCGACCACATTTGAAAGTCAGAGTGAACTTGATACTCACATGGCTGAAGAGTTAAAAGTGTTTGAAAATTTGTGGTTATGTCAGTTTTGCGATGAAGAGTTTGACAATAGGGTGTCAACACGGCAACACCTCTCACAACACTGGAATATTTTAGAATATGACAACTGTTTTAGTCCACATTTAGGGTTTAAGTGCAAGTACTGCCCTACGCTGTTTTGGAACGAGACAGATAGAGAGATACACCAAATGCGTGTACATTTACAAAATCATCCTGAAGATCTTTATAAGTGTCATATTTGCTCAGAAAGTTTTGGTGATAAGGCGTGGTTTATTCATCATTACATGGAAGTTCATCAGATTGGCGATGCAATCAAACAAACATACTTACTGAAGTGTTGCCTATGTGGTATAGTGTTGCCAGATGTTGACACAATGAGGACACATTTCCTAAATCAACATGAAGAAGCAAAGAAAGTGTTTTGTTGCTTGGATAATTGCCAGTATAGACCACTTAGTAACAGGAAATCTTTTAAGATGCATTTGAAGACTGTCCACACTAAGCCGCCTCGGCCAGAGCGCACCGTGGGCTGTACGTACTGCGGCCGCGAGTTCGCAAGCGCCAGGGCTTGCAGCGCCCACACGGCACAGGTGCATAGCAGCGCCAAGTTCAGGTGCAAGATTTGCAAGGAGATCATGCACACCATGGACGAAAGGAAACTTCACTATTTAATTCGACATCCAGGGCGTCATCCGTTCGAATGTACTGAATGCGGCAAATCGTTCCAATATAAGTCATCACTTTACATGCACAAACAGGATCACCAGCCGAACAAGCAGGAGTACACTTGTAAATATTGCAACAAGGTGTTCAAAAAGCGAGACTCGTTCCGAGAGCACGTGCTGATCCACGAGGGCCCGCGTCACGCGTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGTTGCGCCACGAGCGACGCCACACCGGCGAGCGCCCCTACCACTGCCCCCACTGCGACCGCACCTTCGCCGACAAGGGCGCCTGCACCTCACACACCAGGACTCACAGTAACGACATATCATATCCGTGTTTGTATTGTGGACAAACATTCGTTCAAAAATCAAAACTCAAGTATCACATCAGAAAACATACTGGTGAAAATTTAGAAACATGTGCAGTTTGTTCAAAGTTGTTTACGAGTGGATGTTCCCTCAGGGAGCATATGAAAATACACGATGTTAAGAAATCAGTGCGATGTCCTTTGTGTGACCGCAAATATCAAGACGAACGTTACATGTTACGTCACCTGCGCACGGCGCACACCAAAGCGAGGTTCACATGCCCGATATGCCTCACCAATGTCAAAAGCCAATACGGACTAAAATCGCATGTACTCACGCACAGCGGACGACATCCCTTCCTGTGCAAACTGTGCCCAAAAACTTACTCGAGAACTAAGGCGGCCGCGAGCCACCTACGGTTGCGTCACGGCGTCAAGAAAGGTGAGGTTTGCGTGAAGCAGTTCTTCAATATTCTAGATCCGAGAGACTGTCAGCTGGGCATAGATGAAGAAGTGATAACGAACATATTCGGTCCGAGAAAGAAGAAAACGAACGAAGCTCTTGTGGGCGACTTGATGAGTTTCAAGAACGAGTTCAACAAATTCGCACCAAACCCAACAACAGCGGGAAAGACCAGCGACGAAAATACAGACGACGAGTCGGACGGGAAGGAGAGTGAAATGGAGAAAGAAGACGATGGATTCGTATTGAAAAAGGAGAAGAAGCAATCGAGCGAGAGCGGCGATGAATTGGAACCGACTGACTTTGTTAGTGTCAAAATTGAACCGATGGACGAAGATAGTGGTTAA
Protein Sequence: MTSDDSDDEPLSVLAAAKKNTPEKFVDISPLRVRKSKKKRKLDAKKPSLTIKLNLHSKKFAPAAVVERPVDVWLYLKDLNLTGPYSCLLCSEWFINRSKIIVHYVINHKKDYCGICRYFVSDREAWIAHGKFHTPWPCSQCIENFETEQDLRQHLSKNHKLVHCRLCHFRVPDDEQYHTHLLQKHSVHNVSNKDRESLWDVEYEGSNKLLCLLCSKSNILLTNFFSHYMGYHHITIKCLTNIISGKDQPFNIYGADVRPEFIEDQLKSHGRYGYVDLDIKPTDLDESVKIDDIPAKVEDSLTEHLTVEIKQEVLSDDEKNDELETSDDIKKDEDDITNTYKGEEDFDMTSVEIVLLNKCYFDYVNGILNDIKSNLMPLKSEINYDSFKEDPAMDVLCSICKTIQNSVANFIMHMFKMHSIKSIPVFCCRVCATTFESQSELDTHMAEELKVFENLWLCQFCDEEFDNRVSTRQHLSQHWNILEYDNCFSPHLGFKCKYCPTLFWNETDREIHQMRVHLQNHPEDLYKCHICSESFGDKAWFIHHYMEVHQIGDAIKQTYLLKCCLCGIVLPDVDTMRTHFLNQHEEAKKVFCCLDNCQYRPLSNRKSFKMHLKTVHTKPPRPERTVGCTYCGREFASARACSAHTAQVHSSAKFRCKICKEIMHTMDERKLHYLIRHPGRHPFECTECGKSFQYKSSLYMHKQDHQPNKQEYTCKYCNKVFKKRDSFREHVLIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYHCPHCDRTFADKGACTSHTRTHSNDISYPCLYCGQTFVQKSKLKYHIRKHTGENLETCAVCSKLFTSGCSLREHMKIHDVKKSVRCPLCDRKYQDERYMLRHLRTAHTKARFTCPICLTNVKSQYGLKSHVLTHSGRHPFLCKLCPKTYSRTKAAASHLRLRHGVKKGEVCVKQFFNILDPRDCQLGIDEEVITNIFGPRKKKTNEALVGDLMSFKNEFNKFAPNPTTAGKTSDENTDDESDGKESEMEKEDDGFVLKKEKKQSSESGDELEPTDFVSVKIEPMDEDSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387908;
90% Identity: iTF_01387042; iTF_01386137; iTF_01387908;
80% Identity: -