Stip015900.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:3472107-3486194[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.029 1.7 9.6 3.5 1 23 283 306 283 306 0.97 2 13 0.0046 0.27 12.0 0.2 1 23 312 335 312 335 0.94 3 13 5.7e-05 0.0033 18.0 4.3 1 23 341 364 341 364 0.98 4 13 9.7e-06 0.00057 20.5 3.4 1 23 397 419 397 419 0.98 5 13 0.0005 0.029 15.1 0.1 2 23 426 448 425 448 0.96 6 13 3.3 1.9e+02 3.1 0.0 4 23 449 469 449 469 0.92 7 13 0.0054 0.32 11.8 0.7 2 23 476 498 475 498 0.96 8 13 0.052 3 8.7 1.6 1 23 542 565 542 565 0.97 9 13 0.015 0.85 10.5 0.2 1 23 571 594 571 594 0.93 10 13 0.00016 0.0091 16.7 1.0 1 23 600 623 600 623 0.98 11 13 7.8 4.5e+02 1.9 1.0 2 23 630 650 629 650 0.86 12 13 2e-05 0.0012 19.5 3.0 1 23 656 678 656 678 0.99 13 13 5.6e-06 0.00032 21.2 0.5 2 23 685 706 684 707 0.95
Sequence Information
- Coding Sequence
- ATGTCGGGCGAAGTTTGGAAAATAGAGAAAGATTTATGCCGCTGTTGTCATTCGGAGGGAAGTTTCGACGACTTGGATTTTTTCCCCAGTAGTCAGGATGGAGAGGACGTGATGTGCAACATGCTTCGCAATGATTTAGGCATAACGATCACCCCAATAGAGGGTGAACTCAGTACGCAGACATACAAAATATGCGAAATATGCAAACTGAGGCTCATGGATGCGACAAATTTCAAACGGCAGGTTTTATTGTGCGAAGAAAGATTCAAGGACATGTACTCGAGGGAACTAATACAAGGTTTAACTTCCACAATAGAAGTGAAAATAGAGCCAGCTGATGATTTTTATATGCCCGAAGATATAAACATGGACACAACAGGTGCCGATACTTCAACTAATATAAGCGATGAGGAGTTCAAAGTGGAAACTAATGAGGAAGAAGAAGAAGAAGAAGACTCGGATAACGGTGGTGGAGAATTGAACAATCAATTGTTGGAGACGAGGAGTGGGGGGAGATTGAGGGAACTGCTCACGATAGATTTGCCCGCAGCACAGGCGAAGCCGAAGCCGAAGGCTAAGCCTAAACCTCAACCTAAACCTAAACCCAAACCCAAGTCTAAACCTAAGGCGACAAAGGCCAAAGCGAAGACGAAGAAGGTGCCGAAGAAGGGAAGCGATGAAGAGGAGCCTCAGTCGACCGAGGAAACCGAGGAAACCGAGAAAGCTGAGAAAGCTGATAAGCCCGAGAGAGAAAAGACCGGTGGAAAATACCATAACCCGATTATTAACAAGAAATTCCATGTAAAACTTGACAAGAAAGATTATGTAAAAGAGAGTGACCGTTCGTTCAGATGTACACAGTGCGATCATATTTCAGTTAATCTTAGAGCATTGAGTCATCACATCAAAAGCAAACACTATGGCATATCGAAATATTTGTGCCCATATTGCGAGAAAGGCTTTGATTCGCCAGCCCCTTACTTTAACCATAAGCTAAAGGAGCACGGCATAGACGACAGATTCAAATGTCACGCATGTGACGCAGCCTTCAGTACAAACGAATATTTACGACATCACATGAAAAGTTTCCACATGCTTGCGGCGAAAGTGAAGTGCGACATGTGCGATTTTGAAAGTTTGCCGGTATACATGAAGAAACATAGCTTAGTTCACGTTGGCACTAAGACGCATAAGTGTAAATACTGCAAAAAAGCCTTCATAAGGAAAGGAAATTTGTTATATCACGAGAGAATACACACGGGCGATAAGAGGAAGGTGTGCGAGGTTTGCGGAGAAGCGTTCGTGCAGAAAGCGAGTTTAAATTTTCATATGATGAAATATCACCCTGAATGTGAGAAAGGCTTTGATTCGCCAGTCCCTTACTTTGACCACAAGCTAAAGGTGCATGGCATAGATGATAGATCTAAATGCAATGCCTGCGAAGCTACTTTCAATTTTAAACCGCAATTGCTCACTCACATGCAAAGTTTTCACATGCTAGGCGAAAAAGTGAAATGCAACCTTTGCGATTATGAAGGTGGAAAATACCGTAACCCGATTATTAACAAGAAATTCTATGTAAGACTTAACAAGAAAGATTACATAAAAGAAAGCGACCGTTCGTTTAGATGTACACAGTGCGGTCATATTTCGGGTAATACTACATCATTGGGTAATCACATAAAAAGCAAACACTATGGCATATCGAAATATTTGTGCCCACAGTGTGAGAAAGGCTTTGATTCGCAAGCCCCTTACTTTGTCCACAAGCTAAAGGTGCATGGCATAGACGATAGATTTAAATGTAATGCCTGCGAAGCTACTTTCAATTCTAAACAGCAACTGGTCAATCACATGCAAAGTTTTCACATGCTAGGCGAAAAACTTAAATGCAACCTGTGCGATTATAAAGGTTTGCAGAAAAACATGAAGCAACATAGCTTAGTTCATGTTGGCACTaagaagtacaaatgtaaatactgcaaaaaagccttcataaggagaaaaactttgttatatcacgagagaatacacacgggcgacaagaggaaggtgtgcgaggtttgcggggaagcgttcgtgcagaaagcgagtttgaattatcatatgatgaaacatcatccagaagtacatttTTAG
- Protein Sequence
- MSGEVWKIEKDLCRCCHSEGSFDDLDFFPSSQDGEDVMCNMLRNDLGITITPIEGELSTQTYKICEICKLRLMDATNFKRQVLLCEERFKDMYSRELIQGLTSTIEVKIEPADDFYMPEDINMDTTGADTSTNISDEEFKVETNEEEEEEEDSDNGGGELNNQLLETRSGGRLRELLTIDLPAAQAKPKPKAKPKPQPKPKPKPKSKPKATKAKAKTKKVPKKGSDEEEPQSTEETEETEKAEKADKPEREKTGGKYHNPIINKKFHVKLDKKDYVKESDRSFRCTQCDHISVNLRALSHHIKSKHYGISKYLCPYCEKGFDSPAPYFNHKLKEHGIDDRFKCHACDAAFSTNEYLRHHMKSFHMLAAKVKCDMCDFESLPVYMKKHSLVHVGTKTHKCKYCKKAFIRKGNLLYHERIHTGDKRKVCEVCGEAFVQKASLNFHMMKYHPECEKGFDSPVPYFDHKLKVHGIDDRSKCNACEATFNFKPQLLTHMQSFHMLGEKVKCNLCDYEGGKYRNPIINKKFYVRLNKKDYIKESDRSFRCTQCGHISGNTTSLGNHIKSKHYGISKYLCPQCEKGFDSQAPYFVHKLKVHGIDDRFKCNACEATFNSKQQLVNHMQSFHMLGEKLKCNLCDYKGLQKNMKQHSLVHVGTKKYKCKYCKKAFIRRKTLLYHERIHTGDKRKVCEVCGEAFVQKASLNYHMMKHHPEVHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -