Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392437.1:2988920-3001246[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0057 0.33 11.7 0.4 1 23 59 81 59 81 0.98

2 15 0.38 22 6.0 2.3 1 23 87 110 87 110 0.96

3 15 0.00011 0.0061 17.2 2.1 1 23 116 138 116 138 0.99

4 15 1.5e-05 0.00087 19.9 2.5 1 23 144 166 144 166 0.97

5 15 0.0068 0.4 11.5 2.2 1 23 172 194 172 194 0.97

6 15 6e-06 0.00035 21.1 2.8 1 23 201 224 201 224 0.94

7 15 0.00036 0.021 15.5 2.7 1 23 232 255 232 255 0.94

8 15 0.00013 0.0074 17.0 0.1 2 23 262 283 261 283 0.98

9 15 6.5e-05 0.0038 17.9 3.9 1 23 289 313 289 313 0.98

10 15 0.068 4 8.4 2.1 1 23 319 341 319 341 0.96

11 15 0.00058 0.034 14.9 2.4 2 23 349 371 348 371 0.95

12 15 9.7 5.6e+02 1.6 4.3 1 23 377 399 377 399 0.96

13 15 0.00016 0.0094 16.6 4.0 3 23 407 428 406 428 0.96

14 15 1.5 85 4.2 5.6 1 23 780 802 780 802 0.93

15 15 0.002 0.11 13.2 1.1 1 23 964 986 964 986 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0057	0.33	11.7	0.4	1	23	59	81	59	81	0.98
2	15	0.38	22	6.0	2.3	1	23	87	110	87	110	0.96
3	15	0.00011	0.0061	17.2	2.1	1	23	116	138	116	138	0.99
4	15	1.5e-05	0.00087	19.9	2.5	1	23	144	166	144	166	0.97
5	15	0.0068	0.4	11.5	2.2	1	23	172	194	172	194	0.97
6	15	6e-06	0.00035	21.1	2.8	1	23	201	224	201	224	0.94
7	15	0.00036	0.021	15.5	2.7	1	23	232	255	232	255	0.94
8	15	0.00013	0.0074	17.0	0.1	2	23	262	283	261	283	0.98
9	15	6.5e-05	0.0038	17.9	3.9	1	23	289	313	289	313	0.98
10	15	0.068	4	8.4	2.1	1	23	319	341	319	341	0.96
11	15	0.00058	0.034	14.9	2.4	2	23	349	371	348	371	0.95
12	15	9.7	5.6e+02	1.6	4.3	1	23	377	399	377	399	0.96
13	15	0.00016	0.0094	16.6	4.0	3	23	407	428	406	428	0.96
14	15	1.5	85	4.2	5.6	1	23	780	802	780	802	0.93
15	15	0.002	0.11	13.2	1.1	1	23	964	986	964	986	0.98

Sequence Information

Coding Sequence: ATGGAGAACCAAGATGAGATGTTCTCCAATGTCAACGATGAAGAGCTCAATAAGGAAATCCTCCGTCAACAATTACTTGATACACCGGTGAGAAAATTGAGAGAACGGATCAAGAAGAAAAAAAAGAAAATAATTAAAAAGCCCAAGAAGAAGGCCAAAAAGGAAATAATTCTTTATAAATGCCCTTTATGTCCGAAACAATTCCTCAAGAAGCAAGCGCTGGTGCTTCACGAGCAGACGCATTCGGATGTGAAAGCGTTCTCGTGTGACCTTTGCGATTATAGATGTGCAGTAAAAAAATATATATCCGCTCACAAGAAGAGGGTACATCGCGAAAAGACCAAATACGAGTGCGAATTTTGCGCAAAGAAATTCACTTACAGGAACAAGTTGAACAATCATTTGAGGGTGCATACGGGTGAAAAGCCATTCAAGTGCGGGAAGTGCGATAAGAGTTTCAGCTCGAGTTATTCGTTGAGCACGCACACGTTTATACATACAGGTGAGAAACCGTACAAGTGCGCTTTCTGCGCGTACGCATGTCGCGACAGTTCCACTCTGAGGAAACACGAGGCCCGTCACATGGGCACCGACTACAGATACCAGTGCACCATTTGCCACAAGAGCTACAAACAGAAATGGCAATTGAAGAATCACATTGCAGAGAAACACTTCATGGCCGACGTCAGAGGTCACATTTGTGCGCACTGCGATAGATCATTCAAATTTAAGCAGGCCCTTTCCACGCACATGCAAGCGGTCCACTTGAAAACGTTGCGCATGAAATGCGAACTGTGCAATGTAGTGTTGACCAATAAGGCGAACTTATCCGCACATATGCTTACGCATCTCGACATAAGAGCGTACAAATGCACATTCAGAGGCTGCAGGAAATCATTCAAAGATAAGACCACTTTAACGAAGCACACAATAACACACTATCCGGAGAGACAGCACCGCTGCGACATATGCAATAGACTGTTCGCCAGAATGATAAGGCTGAAGGTCCACAAACAGCAGCACTGCGGTAAAAGTGCTAATCTGGAGTGCGACTATTGTGGGGCGTGTTTTAAATCAAAATGCCCACTCGTAAAACATATAAAGTACGCCCACTCTGGATCTAAGCAATATATATGTGATATATGTCATTACGTGGCGCACAAGAGGCAACATATAGTGTTACATTTGAAGTATCATACTGAACATAACCTGAGACATTGTAATATATGCAAAAAGACATACAAAAAGCCGGAATACCTGAAGAGACACTACAAGAAAGTGCACAAAATACATTTTAAGAAGTCACCGACGAATTTAAAAGTTTCTAAAACACAAGAAAATTTAAAAATAAAAAGCGAACCGGAGGACAGCAACGATGAGGACAACTTACCGTTGACGGCGCTCCACCGTCTCCCCAATGGCGACGATAAAAGTGATGGTATGTCGGAGACGACGGCCAGAAGTATAATAGAGAAGAACAGCAAACACTTGACCAAGTTGCCAGATGCCATCTTCGATGAGTTCTTCATCAGTAGAGTGAAAGGTTCAACGGAGTCTCACAGAGTAAAATCCGTCCGAGAGAAAGGTGTGGACAGAAAGAAAAAGGAACTGGCCAAAGTTGAGTTGAAGAGATTGATGAATAGAGCGAGACAGAAGATGCACCGCCGCCACTTGGAGGAAACGAGACGGCTATACAACAAGCGTATGAAGAGATTCTGCTCAAGCGTCAACAGGAAAGATCCACTAGTAATTAAATTTTATAAAAGAAAAAATAAAGTAGCAGACGATGCAATGCATTCTAACTCTGAGCATAACGAAGAGCATAATACTAGAGAGCATAATAAGTTTATTATTATTAGTGATAAAGTTGATAAAGAAGTTGATATTGATAGTGAAAATAAAACTAATTTATCTAATAATAATGATGATAATGAACTAGAGAAATCCACTTACAAAAATATCAAAACAAAAAATATGAAAATCGGCACCGATATAGATAATAAGTGCGAAGAAATAGATTCTAGTGAAGCCTTCGATAATGATACACATGACGTGGATAGTGAAATAGGCACTAGTGATGATAAAGAATATAATAAATGCAATATTAGTAATATAACATCACAAAATGATGATAATGATAATGGCGTTTGTTTGAATGAAGATGTTCAAAGAAATAGTGATACTGATAAAGTAATTGATCATGAAGACACAAATGATGAAACGTCGCAAGTTAATGATCATAAAATTAATATAAATGAGGATAGATCGAAGAATGAACTCGTCAAAGATAATGTAAATGATGAAATCAAAATAAATAGAAAAATTATGATCAATACTCATCAGTGTTATCTTTGTTTTAAGCTGTTCAGTACGAGAACAGAACTGTTGGATCACTGCAAGATTCATTTTGACTATTGCAGTGAGAAAACATTAAAAAAATGCCCCCTCTGCAATCACGTGACGAGTGTTGCAATAAATCAACACATGAAAAGAAAACACAACATCACAATAAAACTACCCTACAAGTTGAAAGATAAAATGTCAACTGAAAACGGCTCGCGATACTATTACGACATTGACGACGAACACATAAAAGAGATACAAATAATACCCACAGTTCGCTATTTAAATAGACAAGCGTACGTCAAAATTGATGAGAAAAAGAGAAAAGATAAAAATGAGGGTATGTTCGAGAGAGTACTTTCGAAGAAGGGCAAAGAGTGGGTAGTCGAACAGAAGAACGTTAGTTTGAGCGATTTCAAACCGTTGCCCAGGTTTAAGAGCACAGATTTTGACATATTCGATGCGAACACGGATAAGGTAGCCAATTACGCGGATAGGATAAAGATTTTGAGTAAAATGGCCAAGAGGGTAGGCGTGAAAATGTATTATCCTTGCGACGTTTGCGAAAAAGTTTGCCAAAATATGAGCGCTCTAAAGCTTCACAGTAGAAAGCACGATCCAAACGCTAAGCCCTATAAGGCCAAAGTTTGGAAGCACAAGACCAAGGATAAGGACAAGGATAAGGACAAGACCAAGGAAAGTGGGGATAAAAAAGTGGAAAAACCATCGGAGAATAGGTACAAGAAACCGCACCCAATAGTGAACAAGCACAAGTGCGATCAGAAACTCAAGGATTTCTACGAGAACAATGTGAGGGGTGGCGACGTTGAGTTTTGGCAGTTTTTGAAGATTTTCAATAAAATGGAAAAGGAGTGTATAAGTGATTTTAGCGAGTTGGAAGAACGCACAGATTTTGGAATACACTATAGCGAAAAAACGTTACGAAATGACGTTACATCCAGTATTTTCAAAGTGTCTGGTGATAAGACTGTTAGGAAAGTGAAAAATAGTGATAAGACTGTTGACAAAGTGAAAAATAGTGATAAGACAGTTAGGAAAGCAAAAAATAGTAACAAAAATCGTATAATAGCGAATAAAAAGAAATACACAAGAGTAGTAAGACTCAGTAGAAGAGAGAGTGAAAGGAGAAATCTACTCAAAATGAAGTTGAGAGAGAAGTACGCCAAAGAATCGTAA
Protein Sequence: MENQDEMFSNVNDEELNKEILRQQLLDTPVRKLRERIKKKKKKIIKKPKKKAKKEIILYKCPLCPKQFLKKQALVLHEQTHSDVKAFSCDLCDYRCAVKKYISAHKKRVHREKTKYECEFCAKKFTYRNKLNNHLRVHTGEKPFKCGKCDKSFSSSYSLSTHTFIHTGEKPYKCAFCAYACRDSSTLRKHEARHMGTDYRYQCTICHKSYKQKWQLKNHIAEKHFMADVRGHICAHCDRSFKFKQALSTHMQAVHLKTLRMKCELCNVVLTNKANLSAHMLTHLDIRAYKCTFRGCRKSFKDKTTLTKHTITHYPERQHRCDICNRLFARMIRLKVHKQQHCGKSANLECDYCGACFKSKCPLVKHIKYAHSGSKQYICDICHYVAHKRQHIVLHLKYHTEHNLRHCNICKKTYKKPEYLKRHYKKVHKIHFKKSPTNLKVSKTQENLKIKSEPEDSNDEDNLPLTALHRLPNGDDKSDGMSETTARSIIEKNSKHLTKLPDAIFDEFFISRVKGSTESHRVKSVREKGVDRKKKELAKVELKRLMNRARQKMHRRHLEETRRLYNKRMKRFCSSVNRKDPLVIKFYKRKNKVADDAMHSNSEHNEEHNTREHNKFIIISDKVDKEVDIDSENKTNLSNNNDDNELEKSTYKNIKTKNMKIGTDIDNKCEEIDSSEAFDNDTHDVDSEIGTSDDKEYNKCNISNITSQNDDNDNGVCLNEDVQRNSDTDKVIDHEDTNDETSQVNDHKININEDRSKNELVKDNVNDEIKINRKIMINTHQCYLCFKLFSTRTELLDHCKIHFDYCSEKTLKKCPLCNHVTSVAINQHMKRKHNITIKLPYKLKDKMSTENGSRYYYDIDDEHIKEIQIIPTVRYLNRQAYVKIDEKKRKDKNEGMFERVLSKKGKEWVVEQKNVSLSDFKPLPRFKSTDFDIFDANTDKVANYADRIKILSKMAKRVGVKMYYPCDVCEKVCQNMSALKLHSRKHDPNAKPYKAKVWKHKTKDKDKDKDKTKESGDKKVEKPSENRYKKPHPIVNKHKCDQKLKDFYENNVRGGDVEFWQFLKIFNKMEKECISDFSELEERTDFGIHYSEKTLRNDVTSSIFKVSGDKTVRKVKNSDKTVDKVKNSDKTVRKAKNSNKNRIIANKKKYTRVVRLSRRESERRNLLKMKLREKYAKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -