Stip003263.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392433.1:5232464-5235225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.01 0.6 10.9 4.6 1 23 143 166 143 166 0.97 2 17 0.00015 0.0089 16.7 2.2 1 23 175 198 175 198 0.96 3 17 0.02 1.2 10.0 0.6 2 23 211 233 211 233 0.97 4 17 0.00034 0.02 15.6 1.4 1 23 242 265 242 265 0.97 5 17 3.8e-05 0.0022 18.6 1.7 1 23 277 300 277 300 0.97 6 17 4.8e-05 0.0028 18.3 0.5 2 23 328 350 327 350 0.96 7 17 0.0014 0.083 13.7 1.2 2 23 360 382 359 382 0.96 8 17 0.067 3.9 8.4 2.1 3 19 388 404 386 407 0.92 9 17 0.0009 0.052 14.3 0.5 2 21 412 431 411 434 0.94 10 17 0.0098 0.57 11.0 1.9 3 23 444 465 443 465 0.93 11 17 0.015 0.86 10.5 2.2 1 23 470 493 470 493 0.93 12 17 0.00055 0.032 14.9 1.1 2 23 505 527 504 527 0.95 13 17 0.053 3.1 8.7 0.4 1 23 559 582 559 582 0.91 14 17 1.5 85 4.2 0.8 2 23 589 609 588 609 0.88 15 17 0.001 0.06 14.1 2.0 2 23 616 637 615 637 0.97 16 17 0.011 0.62 10.9 0.2 1 23 703 725 703 725 0.97 17 17 0.0071 0.41 11.5 2.3 1 23 731 754 731 754 0.98
Sequence Information
- Coding Sequence
- ATGGCATCCGAAACACTTAATAAAAGTACAAATGATGACATGAGGCATGACCCAACATCAATGTTGCCAGAAGAACCAATGGTTTATGAATTAAAAAAGAAGAAAAAGAAAAAAAAGAAAAAACAAACTCAAGAAGACCCCTTGAAGGATATAGGTGAAAAGGTTCCATTGGAAAACATAAGACCGGTTGAAATCATTCCACATTTTTTGGATCCTGAAGTCTCTATTAAGGCGGAAAATATTGAAGTTGATTTGGATTTTAATGATTTCACTACCGATGGAGACATGCTCATTGAAGACGCACACAGTGAAGAGCCTTCTGTGAAGTTGGGTCAGGAGAATCGGAATGCTGTAATTTTAACACTAGAGAATATAATCGATGAATCCGTTCCGTTCGGTTATAGGCGAGGGACGGGAATCAACAATCACGTGTGCGGAATATGTCATCTAGTCTTCCAATCTACAAAGACTTTGAGAATGCACCAGAAGAGGAAACACAAAGTGTTTAGAAAGTCATTTACGCACATATGCGACCACTGTGGCATGTCTTACGAACAAAGAAACAGTTTAGTAGCCCATATAAAGAGAAAACATGATCCGCACACCCCGTCGGATGACGGTGAAGAAAGAACTTGTGATATATGCGCTTTAGTTTTCAAAGGCGTGACAAGATTGAGAATGCATATGCGTAGGAAACACGGCTCGTTTGAGGAGTCATTTAACCACGTTTGCGACGAATGCGGCTTGACTTACGACAAATATAGAAGTTTAATGGTTCACATGCAAAGAAAGCACACGAATCAAACAAAAACTGAAGTGAACCAGTGGTACAAATGTCCGTTTTGTCCAAAAATATTCACCAAAAGGGAGACGTATGCGAGACACGTACAAAGAAAGCATCGAGTCAACGAAGACGGTCAGATGGCGCAAAACGAAGAGAATGAACTCGGTGGTTTTAAAAATCCCAGAACAGGTGAAATATCTTGTAAAGAGTGCCCGTTGGTTTTCTCTTCGGTGAATTATCTCAAACTTCACATGAGAAGAAAGCATAACGCTTTGAAAGAAGATTTTAGATTGAAATGCAGGATTTGCAACTTGTCTTACGACAAAATTGAGAGTCTAAAGCGACACGTAAGAAGGAAACACGACAAAGGCTCTCATTGCACTGTTTGTAATAAACAGTTCGACACGAGGGAGTCCTATTTGAATCATTCACATATGAAAATTATCAAGGAGTGTTCGATTTGTGGTCTAATATTTGCGTCGCAAGGTGGTCTAGCTAAACATTTGCGATGTACCCACAAAATGGACGCACCAAAGACAGTATTTTGTAACATTTGCAACGAAGGCTTCAGTGATAGGAAGCATCTTAAGCCGCATTTCATGAAAGTGCATTTAAAAGTGTCCTACACGTGCATTTATTGCAGTAAAGTGTTCAAAGCGAAGGAGAGTTACAGACGGCATGTGATGTTTAAACATCCAAAAGTCAAAGAAACAGTAGTCGAGTTTCAAAAGTGCGAGCAATGTACGGAAACGTTTCCCGATGAGTTTGAACTTTGCAAACATATAAATTTAGTGCACGGCAAAGAGAATACAGCAAACAGATTGACAGATAAAGATGATGATGTTGTCGATGATATAGTGAAAAGAGAGGAAATAGACACGAAAGATACATTCCAGTGCACCAAGTGTCCGGATAACTATCCGACTTGGGAGTTGTTGAGACTTCATTTCGAGCAGAATCACCGTAGTCTCAAAGAGACTCAGTGTCAAGTTTGCGGTGAATTCGTACCAGTATTGGATCTGTCGAAACATATGAAGTCTCACAACACAGAAACCGTGGTTCAGTGTAAATATTGCGACTTTAACACTTCAAACAGGACAAGCATGACCCAACATATGTTGAGACACAAGAACGCTGAAACAGTGAATTGTGATTATCCTGGATGCCGTTATAAATCCTTTTACGAAGGTGCTATGGATCGACATAAGCAGAAACACAAGGATCAGGGTGTTAAACTGCAGTGTAGCAAATGTCCATTTCAAACAATGAATAAATATATATTAAGATACCACGAGGAGGCACATTTGACTGGAAAAAAAAGATATTCGTGCGATAAATGCGATTATGCCACTATATTGCCGGCAAATTTGGTCCAGCACAAGTATAAGCATTCGTCTGAGAAAAGATTCAAATGTGAAATGTGCTCCTTTGCGACAAAGTATAACACGTCCTTGAGGATTCACGTCAAAAAGAAACACTGTGATCTCCCAACAAACAGTTAA
- Protein Sequence
- MASETLNKSTNDDMRHDPTSMLPEEPMVYELKKKKKKKKKKQTQEDPLKDIGEKVPLENIRPVEIIPHFLDPEVSIKAENIEVDLDFNDFTTDGDMLIEDAHSEEPSVKLGQENRNAVILTLENIIDESVPFGYRRGTGINNHVCGICHLVFQSTKTLRMHQKRKHKVFRKSFTHICDHCGMSYEQRNSLVAHIKRKHDPHTPSDDGEERTCDICALVFKGVTRLRMHMRRKHGSFEESFNHVCDECGLTYDKYRSLMVHMQRKHTNQTKTEVNQWYKCPFCPKIFTKRETYARHVQRKHRVNEDGQMAQNEENELGGFKNPRTGEISCKECPLVFSSVNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCTVCNKQFDTRESYLNHSHMKIIKECSICGLIFASQGGLAKHLRCTHKMDAPKTVFCNICNEGFSDRKHLKPHFMKVHLKVSYTCIYCSKVFKAKESYRRHVMFKHPKVKETVVEFQKCEQCTETFPDEFELCKHINLVHGKENTANRLTDKDDDVVDDIVKREEIDTKDTFQCTKCPDNYPTWELLRLHFEQNHRSLKETQCQVCGEFVPVLDLSKHMKSHNTETVVQCKYCDFNTSNRTSMTQHMLRHKNAETVNCDYPGCRYKSFYEGAMDRHKQKHKDQGVKLQCSKCPFQTMNKYILRYHEEAHLTGKKRYSCDKCDYATILPANLVQHKYKHSSEKRFKCEMCSFATKYNTSLRIHVKKKHCDLPTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386982; iTF_01386080; iTF_01387854;
- 90% Identity
- iTF_01386080;
- 80% Identity
- -