Stip008742.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392437.1:326964-341210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.0097 16.6 1.8 1 23 231 253 231 253 0.99 2 12 0.0026 0.15 12.8 1.0 2 23 261 283 261 283 0.96 3 12 2.1 1.2e+02 3.7 3.7 1 23 287 309 287 309 0.93 4 12 0.021 1.2 10.0 2.5 1 23 314 336 314 337 0.95 5 12 0.0053 0.31 11.8 0.1 3 23 343 364 342 364 0.96 6 12 0.00015 0.0089 16.7 0.3 1 21 374 394 374 395 0.94 7 12 3 1.7e+02 3.2 0.3 5 23 410 428 407 428 0.85 8 12 0.00023 0.013 16.2 0.4 2 23 435 457 434 457 0.95 9 12 1.7e-05 0.001 19.7 0.8 2 23 473 494 472 494 0.97 10 12 7e-06 0.00041 20.9 0.6 1 23 500 522 500 522 0.98 11 12 1.7e-06 0.0001 22.8 6.4 1 23 528 550 528 550 0.99 12 12 8.2e-07 4.8e-05 23.9 2.7 1 23 556 579 556 579 0.97
Sequence Information
- Coding Sequence
- ATGAGGGATTTACTCATTTGTCGGATATGTCTTGCGACGGACATTAAACTGTTTAATTTACATCAATACAAACTGGTTGAGAGTTACGAGATGTTGACGCAGACTAAGGTATCCGACTATGACAGCTTACCGCAACATACCTGCAGTTACTGTAGCACTCTGCTGTTGAAAAGCGCACAGTTCAAAAGGAAATGCAAAAACACACAGGATCTGTTGAAGTATTCACTGACACAACAAGAAATGCCTGCGCTCAACTATTTGAACACTGTCGACCGTGTACAGCAAAATTTAGTGTTGCCATACAAAACGGATACCACAAACAAAGTAGACATAACCGAAGAGTCGTACGCCGCAGACAATAAAATTAAAGATGAAATCACGGACTCGAGCGATGAAGACGAAGAACCCTTGGCTATAATAAAGAAACTGTATAATAAAAGAAACAATGATGATGACGTTATAGACAATTTTGATATGTCTGTTAAAATGGAGGAAGGATTAAACGAACTGTCTCCGATTGATCGAGACAATACAGATTTATTTGAAACTATAACCCAGTTTGATACGGAGAGTAAAGAATATGGAATTTTGGACTCTAACAGCGATATACAAGTCATAGTTTTGAATAAAGACCAGCAATTCACCGAGTTCAACGCGAGGAAATCATCGTTGAATTATCTAAATTCGTTTTATAAGTGTGATAAGTGCTTCAAGGGTTTCATAACTGATGCGACGTTCAAAAATCATATGATCAAGCATGACTCTACGAGCGGCAACGAAGTGTGCGAGATATGCGCCTGTCGTTTCACGAGCGCGCGTACTTTGCGCGCTCACACTGCGACCACTCACGAGAGGAAATACGTTTGCAAGAAGTGCAACCACGTCTCCAAGACTGGGCACTCAGCGAGAGAACACTCCAAGTGGCATAACGGATTCACATACATTTGCAAGATATGTGGAGCCTCTTTTGGCAAGTCGACAAGTCACCTGACGCACATCCGTCTCCACCATCCGACGGACAACGCGTGCGACTTGTGCGGCGAACGCTTCATAGGCGAGTACGGACTCAAGATGCACAAGAAGAAGGTCCACAGGGACAATAGTATGAAGAAGATCGAGTACCGTTGCGAAGTGTGCAACGTTAGATTCAAAAGCTTAGAAGCTCTCAAGAGGCACAAGGAAACGATGAAAAATGATCTCTGCGATGACCAGTTAAGGCCGTGCATTCACTGCGGCGAAGGACTACTAAGCGAAGAGTCTCTTAAGGAACATTTGAAAATGCACAGAAAAGACTCTTCGGTCGAATGCGAACAGTGCGGTAGGCGGTTCGCGCACGAGCGCTCTCTGTCTGCGCACGCGCAGCGCGTCCACGCCGGACGTTCGCCAGTCGCTCGCCAGCGGCCGCAGCGGGCGGTCGTGTGCGAGCTCTGCGGCAAAACTTGTATTTCAAAAGCGTCTCTCGTGTATCACCAGCGCACGCACACCGGAGAGCGTCCGTACGCGTGCACCGAGTGTCCGAAGCGTTTCAGCGTCTCGCAGAGGTTACAGATACATCTTCGGACTCACACCGGAGAGCGTCCGTTCCAATGCACTCACTGTCCGAAGGCTTTCAAGCACAAGGCCGCCCTCAACAGACATCACAGGGTACACACAGGCGCTAAGCCGTATGCGTGTACGCATTGCGGAAAGACATTTTCGCAATCGAACAGTATGAAGACGCACGTCAGAACTGTACATTTGAAACTACCCGCGCTATACAGAAATAGAAAAATTAAAAATGAATAA
- Protein Sequence
- MRDLLICRICLATDIKLFNLHQYKLVESYEMLTQTKVSDYDSLPQHTCSYCSTLLLKSAQFKRKCKNTQDLLKYSLTQQEMPALNYLNTVDRVQQNLVLPYKTDTTNKVDITEESYAADNKIKDEITDSSDEDEEPLAIIKKLYNKRNNDDDVIDNFDMSVKMEEGLNELSPIDRDNTDLFETITQFDTESKEYGILDSNSDIQVIVLNKDQQFTEFNARKSSLNYLNSFYKCDKCFKGFITDATFKNHMIKHDSTSGNEVCEICACRFTSARTLRAHTATTHERKYVCKKCNHVSKTGHSAREHSKWHNGFTYICKICGASFGKSTSHLTHIRLHHPTDNACDLCGERFIGEYGLKMHKKKVHRDNSMKKIEYRCEVCNVRFKSLEALKRHKETMKNDLCDDQLRPCIHCGEGLLSEESLKEHLKMHRKDSSVECEQCGRRFAHERSLSAHAQRVHAGRSPVARQRPQRAVVCELCGKTCISKASLVYHQRTHTGERPYACTECPKRFSVSQRLQIHLRTHTGERPFQCTHCPKAFKHKAALNRHHRVHTGAKPYACTHCGKTFSQSNSMKTHVRTVHLKLPALYRNRKIKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387833;
- 90% Identity
- iTF_01387833;
- 80% Identity
- -