Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392434.1:665369-666985[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.7 2.2e+02 2.9 1.8 2 23 223 245 220 245 0.87

2 10 0.00013 0.0074 17.0 0.8 1 23 251 273 251 273 0.99

3 10 0.0014 0.083 13.6 3.8 1 23 279 302 279 302 0.98

4 10 0.00087 0.05 14.3 0.2 3 21 310 328 308 329 0.91

5 10 4e-07 2.3e-05 24.8 1.1 2 23 347 368 346 368 0.95

6 10 3.2e-06 0.00019 22.0 3.5 1 23 375 397 375 397 0.98

7 10 0.00011 0.0064 17.2 0.3 1 23 403 425 403 425 0.97

8 10 7.3e-06 0.00042 20.9 2.1 1 23 431 453 431 453 0.96

9 10 2.3e-05 0.0014 19.3 2.7 1 23 459 481 459 481 0.98

10 10 0.00012 0.0072 17.0 3.5 1 23 487 510 487 510 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.7	2.2e+02	2.9	1.8	2	23	223	245	220	245	0.87
2	10	0.00013	0.0074	17.0	0.8	1	23	251	273	251	273	0.99
3	10	0.0014	0.083	13.6	3.8	1	23	279	302	279	302	0.98
4	10	0.00087	0.05	14.3	0.2	3	21	310	328	308	329	0.91
5	10	4e-07	2.3e-05	24.8	1.1	2	23	347	368	346	368	0.95
6	10	3.2e-06	0.00019	22.0	3.5	1	23	375	397	375	397	0.98
7	10	0.00011	0.0064	17.2	0.3	1	23	403	425	403	425	0.97
8	10	7.3e-06	0.00042	20.9	2.1	1	23	431	453	431	453	0.96
9	10	2.3e-05	0.0014	19.3	2.7	1	23	459	481	459	481	0.98
10	10	0.00012	0.0072	17.0	3.5	1	23	487	510	487	510	0.97

Sequence Information

Coding Sequence: ATGTCTGAAGAATTGGAGACCTATTGCCGCTTGTGTGCCGAGCCAACACCCGCCGAATTGTTGATTGCAGCCGACGATGATGTCGCTGTTAACTGTACTATTTCTGCAAAAATGCTTTGGATTAACATCGATGTGTCCTCATCTAACACTTTGCCTAGCACTATTTGCTTCTCCTGTTTCGATTTATTAGAGAAAACTTGGAAATTTTTACAAACAGTCCGCAGTGCGCAAGTAAAGTTAACTTCATTATTTTCGAAGAAGGAATCCGACGAAGCGAGTACTGAAACTAAGCTTGAACGAGACGAAAAAATTGGAAAACCTGTAAACAGAGACTGGGAAGAGTTTCAGCAAACAAAACAGGAGGTTAAAGAAGAATCCCAGGTCGAAGAAGTAGAAATTGAAGAGACCAGTATTGACCCCAGGGTATTGTTGAACTTAAATATACCAGTTAAAACTGAGAATAACAGCGACAATGATGGCGTTTACAACGATTTTATTGATTCAGATACTTGCTCAACCGATAGTGACCTGCCGTTGCAGCAGACCGTTAAGAAAAAGTCTAGAAAAAAACACAAAAAGTTTGAGCCCATCATAAAAGATGAACCTGATGAGGAAGTGCCTCTAGATATATCATTGCTGAACCTATCCTGGGACGATTACATGTGCAGATGTGCCAGTTGCGATGCCCAATGTAAGAATATAGCGTCACTACAACTGCATTCCTTGCAAATACATTTGACTTGTTGCACATTCAAGTGTTCCGAATGTGGCAAGGTCGCCAGGAATTATAAATCTTTCGTGAGTCACGCGAGAATGCACAAAAAATTGCTCAAATATTATTGCGAGTACTGCAACAAACAGTTTTCTATGCTGGCATGCGTCAAACAGCATAAAAGGACCGTCCATCGAGACGTCTATTTGACATGTTGTAGAAACTGCGGTGCAACATTTGACACGCCCGAACAACTACAAGATCACATTCTGATATATCCGAAAGATTTTAAACACAGGAAAAGAGGGAAAAATGATAATGACTTGAAATGTGAGGATTGCGGAAAAGAGTTCAAGTCTCGCAGTAATTTGCAGCAACATAAACTGCTTCACACGCAACGCAGCAGAGATTTTTCGTGTCACGTGTGCGGAAAAATGTTTTTCACAAAGGGAACTTTGAGCACACACATGACAACTCACGAGGACACGAAGCCTTTCAAATGCGAGTTCTGCCCGATGGCGTTCAGAGCTCGTGGGAATCTTCAATCCCATATAACTCTACATTCCGGTGCTAAGCCATTTGTGTGCGAACAATGCGGAAAAAGTTTCCGAGTGAAACGTCATTTGAAATCTCATTCAATAGTGCATACGGATTTAATGCCTTACGTTTGCGAGTACTGCAATAAGTCTTTTAGATTTAAGACCCGTCTAAACCTACACGTTAGGCAGCATACGGGAGCCAAGCCTTACAATTGCGTGTACTGCCGTAGGGACTTCACAAATGGATCGAATTATAAAAAGCACATGAAACGCAGACATAATATAGACACATCGAAGAAGAGATATAATAATATTGTAGATCAAAGTGCGGAGAGTAATGGCACGAATAATACTAGTCAAACTTGA
Protein Sequence: MSEELETYCRLCAEPTPAELLIAADDDVAVNCTISAKMLWINIDVSSSNTLPSTICFSCFDLLEKTWKFLQTVRSAQVKLTSLFSKKESDEASTETKLERDEKIGKPVNRDWEEFQQTKQEVKEESQVEEVEIEETSIDPRVLLNLNIPVKTENNSDNDGVYNDFIDSDTCSTDSDLPLQQTVKKKSRKKHKKFEPIIKDEPDEEVPLDISLLNLSWDDYMCRCASCDAQCKNIASLQLHSLQIHLTCCTFKCSECGKVARNYKSFVSHARMHKKLLKYYCEYCNKQFSMLACVKQHKRTVHRDVYLTCCRNCGATFDTPEQLQDHILIYPKDFKHRKRGKNDNDLKCEDCGKEFKSRSNLQQHKLLHTQRSRDFSCHVCGKMFFTKGTLSTHMTTHEDTKPFKCEFCPMAFRARGNLQSHITLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYVCEYCNKSFRFKTRLNLHVRQHTGAKPYNCVYCRRDFTNGSNYKKHMKRRHNIDTSKKRYNNIVDQSAESNGTNNTSQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386976;
90% Identity: iTF_01386976;
80% Identity: -