Stip012127.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- ZFX
- Assembly
- GCA_947623395.1
- Location
- OX392424.1:9548191-9552647[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.13 7.8 7.4 0.6 1 23 245 267 245 267 0.91 2 14 4.1 2.4e+02 2.8 0.2 6 23 279 296 279 296 0.96 3 14 0.037 2.2 9.2 0.5 2 23 306 328 306 328 0.95 4 14 5.5e-07 3.2e-05 24.4 1.2 2 23 354 375 354 375 0.97 5 14 1.4e-06 7.9e-05 23.2 0.9 1 23 382 405 382 405 0.97 6 14 0.007 0.41 11.5 0.1 1 23 411 433 411 433 0.96 7 14 0.037 2.2 9.2 2.3 1 23 439 461 439 461 0.96 8 14 0.0043 0.25 12.1 1.4 1 23 596 618 596 618 0.97 9 14 0.00014 0.0084 16.8 5.3 2 23 625 647 624 647 0.94 10 14 0.0037 0.21 12.4 4.1 1 23 653 675 653 675 0.93 11 14 1.7e-06 9.9e-05 22.9 1.6 1 23 681 703 681 703 0.99 12 14 0.00014 0.0081 16.8 1.9 1 23 709 731 709 731 0.98 13 14 0.00044 0.025 15.3 4.0 5 23 740 758 737 758 0.96 14 14 0.00041 0.024 15.4 2.3 1 23 764 787 764 787 0.96
Sequence Information
- Coding Sequence
- ATGGATACCAAACCAGAACAAGTATACATTATCAACATTCCCAACAGTCAGCCGTCAACTGCAACCACGGATAATATGCACGAATCGACTACCACCGAAATCATTATAAGCAGTGAAAGTAAAATGTGCCGTATATGCGCCACCATGACCGAGATGGTGATGCCAATATTTGAAGAGGAAGGAGTGCAAAATAACTTGGCGGATAAAATTCATAAATATTTGCCCATACAGGTATCAGAGCAAGATATATTCCCTCGAGTAGTTTGCTATCAATGCGTGAGTACTTTGCTCGCATTTCACGAGTTGGTACTTTGTTGCGAGCAAGTGGACGTTGCGTTGAGATCACGACAATTATCTCCTGAACTTACAAATCAGGCATCAAACTCAAATGTTGCAGAAACAAGTGCCGCAACAGACAAGGATGATATAAAGTCGGAAACAACAGTGAGTTTTATAAAAGGTGTGTTGATTAATTATTGTCACATATTGAATATTGACGAAGATGAGTTTAAGTTTGTATGTCAAAAGTGTAACGAGAAACCTCTCTTGAACAGTGTCCCCGAATTTTGTGAACACCTTTCGGTCGTACATTGTTTGAGTGAGAAGAAAGCAATAAAGCACTTTATTAAAAACAATGTCACCTTTGAACAAGCTCTAGTATCTGACGATTCAAACTCAGACAGAGAGGATAATGTAATTGAAAAGAATGAAAAAATTAAAGAGCCACCCGACTACAATTGTCCGTTTTGTGACAGCGTGTTTACATCAGCGACAAGATTAGTTTTTCACCTCAACCAACATGTCGAAGGCAACATAGAAGATGGCATGACATGCTGCAACAATGTCTATAATAATAGGAAATCGTTTGTGGAACATTTGCAAGAGCATGTCAATAATTGTACCACCGGAGCGAACACTTGTCGCACGTGTGGATATAAAGCAGACAATAGCGAAGACCTACAGTATCACATCACCCGAACACACCTCGCAGGAGGTGCTCCAAAAGAGAAGAAAACGCCTGGGCAAGAAAATTCAAGGAGACAAAAATATATTCCCGCAGTGTGTCCCGAATGTAATAAGACATTTTCAAACAAATACAACATGTTTGTACACATGAAGAATCACAGTAGGGAGAAAAGTGTTTACAAGTGCGCAATATGCTCAAAAAGTTACAGAAATAAAGGAAATTTAACAAATCACACGAAGGTGGTACATCAAGGAGTTTTGTCCCACGTTTGCCCCACGTGCGGAGAGGCTTTTCCTACTCGAATAGCTCGCGACGTTCACGCAAGAATGCACACTGGAGACAAACCGTTCAAATGCACTTACTGCGGTGCATCTTACCGAGCCAAAAACACACTCGATTGCCACATAAACATGCACTTAAACATAAGAAAATTCCAACGCCGCCCATCATCCTGTGATGATATATCGATCGAATACGATGCGGCCTCCGATCGAAACGAATCTATCAGCGAAGACGACGAACCCTTATGCAAAATTGTCGACAGTAAATCGCAATTATTCATGCGGTTCTACCAAGCCCTGGTTAATTTTAGAGATCATTTTGAAAATGAGCACACGCATAAGAAATGTAGCTACCCAGATTTCACGGATAACAGTGATTCGAATGACTCCAAGGAAGATGTGGCCGAAGATGACGGAAATGTGGACGTCAACAGTTTCGATGATCTCACGGACAGTAACATGAGAAAGGGCAGAATGGACGACGAAACTCGAGAGGAACTTAAACAAGTGCAAAAGAGAGTTAACAGAAAAATTTTATATATGTGCAAAATATGCGGAAAGGCATTGAGTTCGGCGCACACGTACTTGTTCCATCAGCGCATACATACGAACGAGCGTCCGTGCGTTTGTCACATATGCGGAAAACAATTCCGAACGCCCAACGGTCTCCATAGACATTTAACATCGACACACGAACGTCTAAGGAGGCACACGTGTCTATGTTGCTCCAAAACGTTCGCGAACGCACAGAACTTGAGACAACACGTGAGAATACACACTGGCGAGCAGCCTTATGTGTGTGCGCAGTGCGGGAAACGTTTCACACAGAGCGGCACACTCCACGTACACTTGAAGACACACATAGACCACTTTCCGTACCATTGTGCCGAATGCGGGGCGAAATTCCGCCTCAAATCTGGCCTGACGAGACACCGCCTGAAGCACACGGGCGAGAGACCTCACGTATGCCATTGCGGGAAATCGTACAGACAAAAGCGCGAATTAAATAATCACATATTGACACACACCGACTCGAAACCACATCCTTGCACGTTGTGCGGAGCAACGTTCAGACATAGAAGAGCTTTGAGGCTCCACGCCAAGAGAGTCCACGATCTTGTGCAACCGAATATATTTACGCAACTGGCGTTACCGTCCCAATTGTCCTACCAATGA
- Protein Sequence
- MDTKPEQVYIINIPNSQPSTATTDNMHESTTTEIIISSESKMCRICATMTEMVMPIFEEEGVQNNLADKIHKYLPIQVSEQDIFPRVVCYQCVSTLLAFHELVLCCEQVDVALRSRQLSPELTNQASNSNVAETSAATDKDDIKSETTVSFIKGVLINYCHILNIDEDEFKFVCQKCNEKPLLNSVPEFCEHLSVVHCLSEKKAIKHFIKNNVTFEQALVSDDSNSDREDNVIEKNEKIKEPPDYNCPFCDSVFTSATRLVFHLNQHVEGNIEDGMTCCNNVYNNRKSFVEHLQEHVNNCTTGANTCRTCGYKADNSEDLQYHITRTHLAGGAPKEKKTPGQENSRRQKYIPAVCPECNKTFSNKYNMFVHMKNHSREKSVYKCAICSKSYRNKGNLTNHTKVVHQGVLSHVCPTCGEAFPTRIARDVHARMHTGDKPFKCTYCGASYRAKNTLDCHINMHLNIRKFQRRPSSCDDISIEYDAASDRNESISEDDEPLCKIVDSKSQLFMRFYQALVNFRDHFENEHTHKKCSYPDFTDNSDSNDSKEDVAEDDGNVDVNSFDDLTDSNMRKGRMDDETREELKQVQKRVNRKILYMCKICGKALSSAHTYLFHQRIHTNERPCVCHICGKQFRTPNGLHRHLTSTHERLRRHTCLCCSKTFANAQNLRQHVRIHTGEQPYVCAQCGKRFTQSGTLHVHLKTHIDHFPYHCAECGAKFRLKSGLTRHRLKHTGERPHVCHCGKSYRQKRELNNHILTHTDSKPHPCTLCGATFRHRRALRLHAKRVHDLVQPNIFTQLALPSQLSYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -