Stip015878.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:3334746-3338697[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0054 0.31 11.8 0.1 1 23 63 85 63 85 0.95 2 23 0.053 3.1 8.7 0.9 2 23 112 133 111 133 0.94 3 23 0.047 2.7 8.9 1.7 1 23 155 177 155 177 0.98 4 23 0.00029 0.017 15.8 2.0 1 23 181 203 181 203 0.96 5 23 0.06 3.5 8.5 0.3 1 23 208 231 208 231 0.91 6 23 0.0015 0.089 13.6 0.2 1 23 237 260 237 260 0.94 7 23 0.008 0.46 11.3 0.8 1 23 267 290 267 290 0.95 8 23 0.29 17 6.4 0.4 1 23 339 361 339 361 0.96 9 23 0.11 6.3 7.7 0.3 3 23 388 408 386 408 0.96 10 23 0.0044 0.26 12.1 2.5 1 23 430 452 430 452 0.99 11 23 0.012 0.7 10.7 5.2 1 21 456 476 456 478 0.94 12 23 0.00015 0.0087 16.7 0.7 1 23 483 506 483 506 0.96 13 23 0.12 7.3 7.5 2.2 1 23 512 535 512 535 0.96 14 23 0.047 2.7 8.9 0.1 1 23 575 597 575 597 0.97 15 23 0.18 11 7.0 0.1 2 23 621 643 620 643 0.92 16 23 0.033 1.9 9.3 3.0 2 23 666 687 665 687 0.96 17 23 0.00064 0.037 14.7 0.1 3 23 693 713 692 713 0.96 18 23 0.067 3.9 8.4 0.9 1 23 721 744 721 744 0.85 19 23 0.0026 0.15 12.8 2.1 1 23 750 773 750 773 0.98 20 23 0.44 26 5.8 3.6 1 23 779 802 779 802 0.96 21 23 0.0012 0.072 13.9 3.4 1 23 808 830 808 830 0.97 22 23 5.4e-06 0.00031 21.3 0.9 1 23 836 858 836 858 0.99 23 23 0.00023 0.014 16.1 3.3 1 23 864 886 864 887 0.95
Sequence Information
- Coding Sequence
- ATGGTTAGGCGGGGTAGGAAGTTGAAAGAAAACGTTAGTGAGCGCCAAATGCGAAGACGGAGACGAGCCAACAACGAACTGCCAGAGGAATCCCAGAAGAGAATCGGAAAGACCATGATGAGGAAGAACGCGATGATTCTTCTGGAAAATTCTACAGCCTGGGCGTTCAGGTGGTTCCATAACTCTTTCTACTGTTCGTACTGCGACGCCAAGTTCGTAGACGTCGATCCCTTGAGGGATCACATCGGGAACCACTCAAACGAATTGCCCACAAAGAGAGTTTTTGCCAAAGTGACCGAAAACAACATGATCAAAGTGGACATAGCCAACCTGAGTTGTAGACTGTGCGGTCACAGTCTAAATgatttagaatctttgaaagaacatttgtttctgcacgacaaagctttgaataagaactacagcgacggagtgttgcccttcaagttggaatcaaaagggttcacgtgtcagaagtgctttgtgaatttcgacagttttgcaagaatgaacgaacatatgaacacccattaccagaatcacatctgcgattcatgcggtaaagctttcgtgtcgaaatctaggttcaggactcacgtacagtcgcacgaagtgggtagttttccgtgtaacgaatgcagtgaggtcttcGAAACTAGAGCGACAAGAATGGGACACAGGTACCGTGTTCATAGGAAGGGTGTACGGTACACTTGTCCAAGATGTCCCGAGGTGTTCACCACTTATTACGCCCGATCTAAGCACTTAATTGAGGGGCACGCCCAACAAAGGAAGGAGTATGATTGCGCTGCTTGCGGCAAGAGTTTTGAAACGCGATGCAAAAGAGCAGCTCACTTGAGAAGCGCTCACAAACCGAAAAGGGAGCCGACATCGGACAGTAATCGACAAAAAGTGCAATGGAAAAAGAAGCAAAGGGTGGCCGAGGATAAAGCAAACGCCTCTATAATATTAAACAATTCGAATGCAGTTGTTTTTAGATGGCAAAGAGGGAGATTTATGTGCGCGTACTGTCCGCAAATTTGTGCCAACATTAATGAAGTTAGGTCTCACACGATCAGTCACGCCAACAAATTGGCTGTGTTTGAAAATCCCAAAGTTAGGAATTCATTTCCTCTCCGCGTGGACATAACAGAACTGGCGTGCGTCGTTTGCAATCAGCACGTTGTCAGTTTACAATTGCTCAAAGATCATATAAAAAATCATGATCTACAAGTGAATCCTGAATACGGCGATGGTGTTATTCCTTTCGTGCTAACTGGAAACGAATATAGATGCGTGCACTGTGATATTCCATTCGAAAGCTTCATGAGGTTGTTTACACATATGAATAAACATTATCAGAGCTTCATATGCCACACGTGTGGTAAGGGATACTCGGCAAAACACAAGCTCCGAGCTCATCAGATGTGTCATGAAAATGGACAGTTCACGTGTACGAAGTGCGATATGGTTTTTTCCAATCGTGTAGCGAGGAATCGCCACCAAAACCTTGCTCATGGCCCGAAAAAACGTTACAGATGTCCAATATGTGAATCTCAATTCGATTCGTATCATTCTCGATTGCGTCACCTAGATAAGAGTCACGGCTCCGTCGACAAAATAATATGGAAATCCAGACGCAAGTATAACAATCACAGAGACAACGCCGCCCTCATAGTCGAATACTCGAACGTATGCCCTTTCAGATGGAGACGGGGTACATTCACCTGTGCCTTCTGCCCGGTGTCCTACGGCGACATTGCCGAACTCAAAAGTCATTTGGTAAAGCACCCCAACAGACAAGACGTCACGAGACTGTCGCGACACTTTGATTTTATCAAAGCGGAAATCAGCGATTTGCGTTGCACCCTGTGCCAAAAACCCATGAAAGATCTGAACGCGTTAAAAGATCATCTAATTGCCGAACATAAAATACCAATAATCAAAGAGCACGATATAGGCATTACGCCCTTTGCGATATCAGACAAGAACTGCGTTTGCACGATTTGCGATGCAAATTTTCAATTTTTCACTAAATTGAACACGCACATGAATCAACATTATCAGAACAACATATGCTTTCAGTGCGGCAAATCTTTTTCCGGTGCCCAAAGGCTTAAGGCTCACTTAGCAATCCACGAGACCTCAAAAAGATCTAGTTTTAAGTGCACCAAATGCGAGGAGGTTTTCCCTACACGAGGACTCAAAGACAACCATTTCACCTCCGTGCACGGTCCAATATTTCGCTACAGATGTCCACATTGTCTCGAAAGTTTCATGCGTTACGCAGACAGAAATAAACACTTGAAATCTGTTCACGGTAGGAAAATCGAGTATCCGTGTCACCTGTGCAAATCTGTCTTCGCCATGTGCAACCAGAGAACCAAGCACATTCAGCAGGTCCACATAAAGAACAAGCAGTTTTGCTGCACGGTGTGTCCTTACAAATGTGTGACGGCTGGCCAgctaaagaaccacatggtgaagcatggtgttgagaggaatttccaatgcgatgtatgcaaaaaggcgtacgcgagacggaaaactttgagggaacatttgaggatacataataacgataaaaggtttgcatgtgaactgtgcgataacgcttacgtccagaaatgcagtttgcagagtcacatgCGGACTCATCATCCAAATGCGGAGAGTTTGAAATCGTTAAGAGTAATGCAATAG
- Protein Sequence
- MVRRGRKLKENVSERQMRRRRRANNELPEESQKRIGKTMMRKNAMILLENSTAWAFRWFHNSFYCSYCDAKFVDVDPLRDHIGNHSNELPTKRVFAKVTENNMIKVDIANLSCRLCGHSLNDLESLKEHLFLHDKALNKNYSDGVLPFKLESKGFTCQKCFVNFDSFARMNEHMNTHYQNHICDSCGKAFVSKSRFRTHVQSHEVGSFPCNECSEVFETRATRMGHRYRVHRKGVRYTCPRCPEVFTTYYARSKHLIEGHAQQRKEYDCAACGKSFETRCKRAAHLRSAHKPKREPTSDSNRQKVQWKKKQRVAEDKANASIILNNSNAVVFRWQRGRFMCAYCPQICANINEVRSHTISHANKLAVFENPKVRNSFPLRVDITELACVVCNQHVVSLQLLKDHIKNHDLQVNPEYGDGVIPFVLTGNEYRCVHCDIPFESFMRLFTHMNKHYQSFICHTCGKGYSAKHKLRAHQMCHENGQFTCTKCDMVFSNRVARNRHQNLAHGPKKRYRCPICESQFDSYHSRLRHLDKSHGSVDKIIWKSRRKYNNHRDNAALIVEYSNVCPFRWRRGTFTCAFCPVSYGDIAELKSHLVKHPNRQDVTRLSRHFDFIKAEISDLRCTLCQKPMKDLNALKDHLIAEHKIPIIKEHDIGITPFAISDKNCVCTICDANFQFFTKLNTHMNQHYQNNICFQCGKSFSGAQRLKAHLAIHETSKRSSFKCTKCEEVFPTRGLKDNHFTSVHGPIFRYRCPHCLESFMRYADRNKHLKSVHGRKIEYPCHLCKSVFAMCNQRTKHIQQVHIKNKQFCCTVCPYKCVTAGQLKNHMVKHGVERNFQCDVCKKAYARRKTLREHLRIHNNDKRFACELCDNAYVQKCSLQSHMRTHHPNAESLKSLRVMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387815;
- 90% Identity
- iTF_01387815;
- 80% Identity
- -