Stip003656.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4497178-4499992[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00073 0.042 14.6 5.4 2 23 168 189 167 189 0.98 2 13 0.12 7 7.6 2.2 1 23 192 215 192 215 0.97 3 13 0.00063 0.037 14.8 1.1 1 23 246 268 246 268 0.96 4 13 0.00014 0.0081 16.8 1.0 1 23 274 296 274 296 0.99 5 13 0.0016 0.092 13.5 0.9 5 23 320 339 319 339 0.92 6 13 7.1e-07 4.1e-05 24.0 1.7 1 23 344 367 344 367 0.95 7 13 2.5e-05 0.0014 19.2 1.7 2 23 375 397 374 397 0.96 8 13 2.3e-06 0.00014 22.4 2.1 1 23 405 428 405 428 0.97 9 13 1.9e-05 0.0011 19.5 0.6 2 23 435 457 434 457 0.94 10 13 0.00012 0.007 17.0 1.5 2 23 464 486 463 486 0.94 11 13 0.0017 0.098 13.4 1.2 2 23 493 515 492 515 0.93 12 13 3e-05 0.0018 18.9 0.4 2 23 522 544 521 544 0.94 13 13 3.2e-06 0.00019 22.0 1.4 2 23 551 573 550 573 0.92
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTGTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGTTACATTCGGAATCTTATTTGAACCCTCGGAACATGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACACGAGCCATTAATTGAAAACGATGTCCCTATTAAAATAGAAAAATGTTGGAGTTATGCTTGCAGCGATAATGAAGGACCGTTGGTTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGTCAATCACTCGGATATAAATGTGGCTTTAGATGAAGTATCCAATCAAGATGGCAGAGTTGAAAAGAGCGGAAATGAATTAGATGAAACTGGTAACAGCAGACATGATAATAATAAATGCAATATTTGCAATAAAACTTTTAGGTTCAAAAAGTACCTAGAATGTCACATCAGATCTCACAAAGGCTATAAATGCCAAATGTGTCCACAAATATTGTCGAATCAGAGAGAACACTCAAAACACATAAATTCGAAGCACGTAATCGACGCCAAATATTGGTGTATCGCTTGCGATGCAACTTTTTTGGAAGTAAACGAGCTAAAATGTCACATCAAAACACACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAGACACGAAATGGCGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAGTGATGGGTTTACACTGAGCAGAAGTTTAAAGGCTCACATGAAAACACACAAGGACGGAACACTGCACAAGCCCCGCAATAGACAAATGTTGATGCATGCTGAGATAAAAGAGCGCGATATATGCAAGAAGACCTTTAAACACAAACAGAGTTTACTCATGCATATGTCAGCTGTACATTTGGGCATTAAGTTTGAGTGCAACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCCAGCACATGTCGGCTGAACATTTGAGCCTTAAGCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGAATTATATACGCCAGCACATGTTGAGTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGATATTTGCAAGAAGACATTTAAATACAAACAGAGTTTAAGCAGCCACATGTCTGTTGTACATTTGGGCCTTCCACCCATTCAGTGTGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCAACCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAAAATAAACAGAGTTTTAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTGAAATCCAGGGAAACTATACGCCATCACATGTCGGCTGTACATTCGGACCTTCCACCCATTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAGGTTTAAGCATCCACATGTCGGCTGTACATTCGAACCTTCCATCAACTCAGTGCGACATTTGTAAGAAGACATTTAAACAAAAAAAGAATTTAAGCAGGCACGTGTCGGCTGTACATTTAGGCTTGAAGTGA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHVTFGILFEPSEHDKIYTICDECIEKLRISTDLKIACGKIIKHEPLIENDVPIKIEKCWSYACSDNEGPLVKVDVKVEREETPTPNDEVNHSDINVALDEVSNQDGRVEKSGNELDETGNSRHDNNKCNICNKTFRFKKYLECHIRSHKGYKCQMCPQILSNQREHSKHINSKHVIDAKYWCIACDATFLEVNELKCHIKTHFKHRCEVCNRDYQSKGELRRHEMAHKDERKFKCSICSDGFTLSRSLKAHMKTHKDGTLHKPRNRQMLMHAEIKERDICKKTFKHKQSLLMHMSAVHLGIKFECNICKKTFKSKQSLRQHMSAEHLSLKPPTQCDICKKTFKSKNYIRQHMLSVHLGSELRPFKCDICKKTFKYKQSLSSHMSVVHLGLPPIQCDICKKTFKYKQGLSNHMSAVHSDLPPTQCDICMKTFKNKQSFNRHMSAVHSDLPPIQCDICKKTLKSRETIRHHMSAVHSDLPPIQCDICKKTFKYKQGLSIHMSAVHSNLPSTQCDICKKTFKQKKNLSRHVSAVHLGLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -