Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392435.1:142522-146410[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.8e-08 1.6e-06 28.5 1.3 1 23 306 328 306 328 0.99

2 10 1.8e-07 1e-05 25.9 1.0 1 23 350 372 350 372 0.99

3 10 7.8e-07 4.5e-05 23.9 4.1 1 23 378 401 378 401 0.98

4 10 3.3e-05 0.0019 18.8 3.0 1 23 407 430 407 430 0.96

5 10 9.1e-05 0.0053 17.4 1.9 2 23 436 458 435 458 0.94

6 10 9.1e-05 0.0053 17.4 1.9 2 23 464 486 463 486 0.94

7 10 1.5e-05 0.00088 19.9 1.3 2 23 492 514 491 514 0.93

8 10 2.7e-05 0.0016 19.1 1.0 2 23 517 539 516 539 0.93

9 10 3.9e-05 0.0023 18.6 1.2 1 23 544 567 544 567 0.94

10 10 3.2e-05 0.0019 18.8 1.2 3 23 574 595 572 595 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.8e-08	1.6e-06	28.5	1.3	1	23	306	328	306	328	0.99
2	10	1.8e-07	1e-05	25.9	1.0	1	23	350	372	350	372	0.99
3	10	7.8e-07	4.5e-05	23.9	4.1	1	23	378	401	378	401	0.98
4	10	3.3e-05	0.0019	18.8	3.0	1	23	407	430	407	430	0.96
5	10	9.1e-05	0.0053	17.4	1.9	2	23	436	458	435	458	0.94
6	10	9.1e-05	0.0053	17.4	1.9	2	23	464	486	463	486	0.94
7	10	1.5e-05	0.00088	19.9	1.3	2	23	492	514	491	514	0.93
8	10	2.7e-05	0.0016	19.1	1.0	2	23	517	539	516	539	0.93
9	10	3.9e-05	0.0023	18.6	1.2	1	23	544	567	544	567	0.94
10	10	3.2e-05	0.0019	18.8	1.2	3	23	574	595	572	595	0.93

Sequence Information

Coding Sequence: ATGGCTGAAACATTAAACTCAACACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTTTATTTTCCGACTTCATTAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTTGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATATCAATGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGAGGGCACTGTCGTGCTCGACTTGACGGAGGCACTGCAGAGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTGACATGGATATAATAAATGAGGGTTCAGACGAAGATTGCAATCAAGAGGTCAAAGTTGAAGACAGCGGAAACAAATCTGAGGAAACCTGGAGTGAATCTGAAACATACTTCATAGAAGAAGCGTTATTAGCGGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACGATGAAGACTCTGGAATAAATAAGGTTGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGATTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATGAATAAGGTTTTAGAAGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATAAGGAGTTCAATGAAGAGTGTGAAATGAAATCAGATGAAACCTTTAATGATGCTGGTGTCAGTTTAAGAAAAGCAAGCGACATACAGTACGAGTATAAATGCAATGTTTGCAACAAAACATTTAAACGCATAGGGAACTTAGAAAGTCACATCAGAACTCACGGCGACTTTTATAGTAAAGAGGGTTTACTGGATCATAAAGCAGTGCATTTGAAATATAAGCCTTTTACTTGTAACGTGTGTGATAAAGCGTTCAAAATAAAAAGAAATTTAATCAGACACATGTTGACGCATACTGGAATAAAGTCTTTCCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATCATTTTAATAATCACATGAAGAAGGTCCATACGAGCGAAAGTCCTTACAAATGCGACACTTGCAAGAAGTCATTTAAATACAAACATGGTTTAAGAGAGCACGTGTCGGTTGTACATTTGGGCTTTAAGCTTGAGTGCGACAAATGCAAGAAGACATTTAAATACAAACATGGTTTAAGAGAGCACGTGTCGGTTGTACATTTGGGCTTTAAGCTTGAGTGCGACAAATGCAAGAAGACATTTAAATACAAACATGGTTTAAGAGAGCACGTGTCGGTTGTACATTTGGGCTTTAAGCTTGAGTGCGACAAATGCAAGAAGACATTTAAATACAAACAGAGTTTAAAGGAGCACATGTCGGCTGTACATAACCTTGAGTGCGACAGTTGCAAGAAGACATTTAAAACCAAACAGAGTTTAAGGGAGCACATGTCGGCTGTACATTTGGGCTTTAAGTTTGAATGCAACAATTGCAAGAAGACATTTAAAATCAAACAGAGTTTAAGGGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCTGGACTGCAAAATTTGCAAGAAGAAATATAAATACCAACAGAGTTTAAACAGACACATGTCGGCTGTACACTTGGACTTTAAACCATAG
Protein Sequence: MAETLNSTPFCRCCHKNGDFKCLFSDFINENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISMEFKNCVLACKKNACWRGHCRARLDGGTAETPDMKQETSEDEDSDMDIINEGSDEDCNQEVKVEDSGNKSEETWSESETYFIEEALLADDIKVETEEMVNDEDSGINKVEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDITNEDSSMNKVLEEDSNEDITNEDSSMNKVLDEEFNEDVRNEDSSMNKVLDKEFNEECEMKSDETFNDAGVSLRKASDIQYEYKCNVCNKTFKRIGNLESHIRTHGDFYSKEGLLDHKAVHLKYKPFTCNVCDKAFKIKRNLIRHMLTHTGIKSFQCSVCSKSFARKDHFNNHMKKVHTSESPYKCDTCKKSFKYKHGLREHVSVVHLGFKLECDKCKKTFKYKHGLREHVSVVHLGFKLECDKCKKTFKYKHGLREHVSVVHLGFKLECDKCKKTFKYKQSLKEHMSAVHNLECDSCKKTFKTKQSLREHMSAVHLGFKFECNNCKKTFKIKQSLREHMSAVHLGFKLDCKICKKKYKYQQSLNRHMSAVHLDFKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -