Stip011392.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392434.1:5128788-5133745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.4e-08 3.2e-06 27.6 2.5 2 23 206 227 205 227 0.98 2 13 5.2e-05 0.003 18.2 0.2 1 23 230 252 230 252 0.98 3 13 0.0045 0.26 12.1 0.9 1 19 258 276 258 281 0.93 4 13 6.2e-05 0.0036 17.9 0.3 1 23 288 310 288 310 0.99 5 13 0.00017 0.01 16.5 0.5 1 23 316 338 316 338 0.98 6 13 8.4e-06 0.00049 20.7 3.1 1 21 344 364 344 367 0.90 7 13 4.9e-07 2.9e-05 24.5 4.4 1 23 373 395 373 395 0.98 8 13 4.2e-06 0.00025 21.6 3.4 1 23 401 423 401 423 0.98 9 13 2e-05 0.0012 19.5 3.9 1 23 429 452 429 452 0.95 10 13 6e-05 0.0035 18.0 0.6 1 21 466 486 466 489 0.90 11 13 3.2e-07 1.8e-05 25.1 0.4 1 23 495 517 495 517 0.98 12 13 2.6e-05 0.0015 19.1 3.4 1 23 523 546 523 546 0.97 13 13 0.00039 0.023 15.4 1.4 1 23 551 574 551 574 0.95
Sequence Information
- Coding Sequence
- ATGGCTGAAGCATTGAACCCAATACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTCTATTTTCCAACCACATTTACGAAAATGAAATTGAGAATTATTCGCAGATGTTGTACGATACATTCGGAATCTTATTTGCACCCTCCATAGATGACAAAATCTATACAATATGTGACGAGTGTATTGAAAAACTACGTATCTCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCTGCGCTCCACTTGACGGGGGCACTGCAGTGACCCCAGATGTCAAACAAAATTGCTCCAAAGATGAAGATGGCGACACGGATATGATAAATAATCTTTTAGAGGAAGTGTCAAATGAAGAGGTGAAAGTGGAAGAGAGCGGGAACAAATCAGACGAAACCTTCAGCGAATGTGATGAATTTACAGCCGACCTCGAAGTTAATTCAGAAGAGAGTGTCGATTACGAAGACTTTTGTATAGACAAAGTGTCAGACGAAGATGTCACAATTGAAGAGAGCGGAAAGGATAAGGAATCGATGAGTGAATCTGGTGTCAATTTAAGAAACACAAGCGACAAACATGAGAATAAATGCAATATTTGCAATAAAACCTTTGAACGCAAAGGGAACCTAAAAAATCATCTCAGAACTCACGAGGTCTATAAATGCAAAATATGTCCAGAAATATTGTCGAATCAGATGGAGTACAATAAACACATGGAAATACACCCGCGCGTAATAAAACACGAGTGCAAAGAGTGCGGTCTGACATTGGCAACCAAGGGAAGCTTGCTGAGGCATTGTCTAGCCATTCACAACATGAGTATAAAAAAGTATAGTTGCCAGTATTGCGATAAAGGAATGGCTACGAAAGAGCAATTGGTTGTACACCAAAGGATGCACACGGGTGTAAAACCGTATGTGTGCCAGTATTGCGATAAAGGAATGACTACGAAAAGGCAATTGGTTGTACACGAAAGGATGCACACGGGTGTAAAACCGTATGTGTGCAAAAAATGCAATAAAGCGTTTAGTGATAAAAGACACCTACAGAAACATAATACTGAAGTGCATTTGGCACTTAAGCCTTACTTTTGTGACGTGTGTGATTATAGATTCAAAAGAAAAGAACATTTGCAAAAACACATGTTGACGCATACTCTGATAAAATCTTTCCAATGCAGTGTCTGTAGCAAGACTTTTGGGCAAAAACATCATCTCACTATTCACATGGCGGTCCATAATGACGAAAGACCCTACAAGTGCGATATTTGCAAAAAGACATTTAAAAACAAGGTCAATATACACCACCACATGTTGGCTGTACATAAAGAGCACTGTCAAAACGTGCATACCGGTGTAAATTCGTATGTCTGCGGAAAATGCGATAAACTGTTCAGCAGTAAAGCAGACTTAAAGAAACATAATACTGAAGTGCATTTGGCATTTATGCCTTATATTTGTGACGTGTGTGATTATGGATTCATAAGAAAAAGCTATTTGCAAAGACACATATTGACGCATACTGCGATAAGACCATTCCAATGCAGTGTCTGTAGCAAGAGGTTTAGGCGAAAATATCACGTCAGTAGACACGTGGCGACGGTACATAATCACAAAATATTCAAGTGCTACATTTGTCAGAATACATTTAAATCCAAGGCGACTATACGTAAGCACATGTCGGCTGTACATTTGGGCCTTAATTGA
- Protein Sequence
- MAEALNPIPFCRCCHKNGDFKCLFSNHIYENEIENYSQMLYDTFGILFAPSIDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCCAPLDGGTAVTPDVKQNCSKDEDGDTDMINNLLEEVSNEEVKVEESGNKSDETFSECDEFTADLEVNSEESVDYEDFCIDKVSDEDVTIEESGKDKESMSESGVNLRNTSDKHENKCNICNKTFERKGNLKNHLRTHEVYKCKICPEILSNQMEYNKHMEIHPRVIKHECKECGLTLATKGSLLRHCLAIHNMSIKKYSCQYCDKGMATKEQLVVHQRMHTGVKPYVCQYCDKGMTTKRQLVVHERMHTGVKPYVCKKCNKAFSDKRHLQKHNTEVHLALKPYFCDVCDYRFKRKEHLQKHMLTHTLIKSFQCSVCSKTFGQKHHLTIHMAVHNDERPYKCDICKKTFKNKVNIHHHMLAVHKEHCQNVHTGVNSYVCGKCDKLFSSKADLKKHNTEVHLAFMPYICDVCDYGFIRKSYLQRHILTHTAIRPFQCSVCSKRFRRKYHVSRHVATVHNHKIFKCYICQNTFKSKATIRKHMSAVHLGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -