Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392435.1:117181-122306[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.7e-08 1.6e-06 28.5 1.3 1 23 472 494 472 494 0.99

2 11 1e-07 5.8e-06 26.7 2.1 1 23 516 538 516 538 0.99

3 11 1e-06 6e-05 23.5 3.3 1 23 544 566 544 566 0.99

4 11 3.4e-06 0.0002 21.9 2.4 1 23 572 595 572 595 0.98

5 11 0.00023 0.013 16.1 0.7 2 23 601 623 600 623 0.93

6 11 2.9e-06 0.00017 22.1 0.5 3 23 630 651 628 651 0.93

7 11 0.00066 0.038 14.7 2.7 3 23 658 679 656 679 0.93

8 11 2.9e-06 0.00017 22.1 0.5 3 23 686 707 684 707 0.93

9 11 4.3e-07 2.5e-05 24.7 1.7 3 23 714 735 712 735 0.93

10 11 3.3e-05 0.002 18.8 0.4 1 23 740 763 740 763 0.93

11 11 7.2e-05 0.0042 17.7 2.9 3 23 770 791 769 791 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.7e-08	1.6e-06	28.5	1.3	1	23	472	494	472	494	0.99
2	11	1e-07	5.8e-06	26.7	2.1	1	23	516	538	516	538	0.99
3	11	1e-06	6e-05	23.5	3.3	1	23	544	566	544	566	0.99
4	11	3.4e-06	0.0002	21.9	2.4	1	23	572	595	572	595	0.98
5	11	0.00023	0.013	16.1	0.7	2	23	601	623	600	623	0.93
6	11	2.9e-06	0.00017	22.1	0.5	3	23	630	651	628	651	0.93
7	11	0.00066	0.038	14.7	2.7	3	23	658	679	656	679	0.93
8	11	2.9e-06	0.00017	22.1	0.5	3	23	686	707	684	707	0.93
9	11	4.3e-07	2.5e-05	24.7	1.7	3	23	714	735	712	735	0.93
10	11	3.3e-05	0.002	18.8	0.4	1	23	740	763	740	763	0.93
11	11	7.2e-05	0.0042	17.7	2.9	3	23	770	791	769	791	0.96

Sequence Information

Coding Sequence: ATGGCTGAAACATTAAACCCAACACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTTTATTTTCCGACTTCATTAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTTGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAGAAAAATGCTTGTTGGCGAGGGCACTGTCGTGCTCGACTTGACGGGGGCACTGCAGAGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTGACATGGATATAATAAATGAGGGTTCAGACGAAGATTGCAATCAAGAGGTCAAAGTTGAAGACAGCGGAAACAAATCTGATGAAACCTGGAGTGAATCTGAAACGTACTTCATAGAAGAAGCGTTAATAGCAGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACAATGAAGACTCTGGAATAAATAAGGTTGAAGATATCACAAATGAAGACTCTAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTCAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATAAATAAGGTTTCAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAAGGTTTCAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATAAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAACGAAGACTCAAGTATAAATAAGGTTTCAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGAGTTCAATGAAGAGTGTGAAATGAAATCAGATGAAACCTTTAATGATGCTGGTGTCAGTTTAAAAAAAGCAAGCGACATACATGAGTATAAATGCAATGTTTGCAACAAAACTTTTAAACGCATAGGGAACTTAGAAAATCACATCAGAACTCACGGCGACTTTTATAGTAAAGAGAGATTACTGGATCATAATGCAGTGCATTTGAAATATAAGCCTTTTACTTGTAACGTGTGTGATAAAGCGTTCAAAAAGAAAAATAATTTAAGCAGACACATGTTGACGCATACTGGAATAAAGTCTTTCCAATGCAGTGTCTGTAGCAAGAGTTTCGCACGTAAAGATCATTTTAATAATCACATAAAGGTCCATACGAGCGAAAGTCCTTACAAATGCGGCACTTGCAAGAAGACGTTTAATTACGCTCAGACTTTAAAGAGGCACATGTCGACTGTACATTTGGGCTTTAACCTTGAGTGCGACAGTTGCAAGAAGACATTTAAATACAAACAGGGTTTAAGAGAGCACATGTCGGGTGTTCATTTGGGCTTTAGCCTTGACTGCAAAATTTGCAAGAAGACATTTAAATCCAAAGCTAATTTAATGGAGCACATGTCGGCTGTTCATTTGGGCTTTAGCCTTGACTGCAAAATTTGCAAGAAGACATTTAAATACAAACTGTGTTTACGGGAGCACATGTCGGCTGTTCATTTGGGCTTTAGCCTTGACTGCAAAATTTGCAAGAAGACATTTAAATCCAAAGCTAATTTAATGGAGCACATGTCGGCTGTTCATTTGGGCTTTAGCCTTGACTGCAAAATTTGCAAGAAGACATTTAAATACAAAAGTAATTTAAGGAAGCACATGTCAGCTGTACATTCGGGCTTTATGTTTGACTGCGACATTTGCAAAAAGACATTTAAATACAAACAGGGTTTAATAGAGCACATGTCGGCTGTTCATTTGGGCTTTAGCCGTGACTGCAAAATTTGCAAGAAGACATTTAAATACAAACGGGGTTTAAGGAAGCACAAGTCGACTGCACATTTGGATCTTAAGCCAACACCCACTTAG
Protein Sequence: MAETLNPTPFCRCCHKNGDFKCLFSDFINENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARLDGGTAETPDMKQETSEDEDSDMDIINEGSDEDCNQEVKVEDSGNKSDETWSESETYFIEEALIADDIKVETEEMVNNEDSGINKVEDITNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDVRNEDSSINKVSDEEFNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDITNEDSSINKVSDEEFNEDVRNEDSSMNKVLDEDSNEDVRNEDSSINKVSDEEFNEDVRNEDSSMNKVLDEDSNEDVRNEDSSMNKVLDEDSNEDITNEDSSINKVLDEDSNEDITNEDSSINKVSDEEFNEDVRNEDSSMNKVLDEEFNEECEMKSDETFNDAGVSLKKASDIHEYKCNVCNKTFKRIGNLENHIRTHGDFYSKERLLDHNAVHLKYKPFTCNVCDKAFKKKNNLSRHMLTHTGIKSFQCSVCSKSFARKDHFNNHIKVHTSESPYKCGTCKKTFNYAQTLKRHMSTVHLGFNLECDSCKKTFKYKQGLREHMSGVHLGFSLDCKICKKTFKSKANLMEHMSAVHLGFSLDCKICKKTFKYKLCLREHMSAVHLGFSLDCKICKKTFKSKANLMEHMSAVHLGFSLDCKICKKTFKYKSNLRKHMSAVHSGFMFDCDICKKTFKYKQGLIEHMSAVHLGFSRDCKICKKTFKYKRGLRKHKSTAHLDLKPTPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388692;
90% Identity: iTF_01388692;
80% Identity: iTF_01388692;