Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392422.1:3051820-3056791[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.9e-07 5.8e-05 23.6 4.9 1 23 148 170 148 170 0.98

2 12 0.0018 0.1 13.3 0.3 2 23 176 197 175 197 0.97

3 12 2.7e-05 0.0016 19.1 1.1 1 23 213 235 213 235 0.98

4 12 2.6e-05 0.0015 19.1 2.4 1 23 245 267 245 267 0.98

5 12 5.6e-07 3.3e-05 24.4 1.7 1 23 272 294 272 294 0.98

6 12 1.2e-05 0.00069 20.2 2.1 2 23 301 322 300 322 0.97

7 12 1e-07 6e-06 26.7 1.5 1 23 328 350 328 350 0.96

8 12 2.3e-06 0.00013 22.4 0.4 1 23 356 378 356 378 0.97

9 12 2.5e-06 0.00014 22.3 0.6 1 23 384 406 384 406 0.98

10 12 5.6e-07 3.3e-05 24.4 3.4 1 23 412 434 412 434 0.97

11 12 4.1e-07 2.4e-05 24.8 1.0 1 23 440 462 440 462 0.99

12 12 0.00041 0.024 15.3 0.6 1 20 468 487 468 490 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.9e-07	5.8e-05	23.6	4.9	1	23	148	170	148	170	0.98
2	12	0.0018	0.1	13.3	0.3	2	23	176	197	175	197	0.97
3	12	2.7e-05	0.0016	19.1	1.1	1	23	213	235	213	235	0.98
4	12	2.6e-05	0.0015	19.1	2.4	1	23	245	267	245	267	0.98
5	12	5.6e-07	3.3e-05	24.4	1.7	1	23	272	294	272	294	0.98
6	12	1.2e-05	0.00069	20.2	2.1	2	23	301	322	300	322	0.97
7	12	1e-07	6e-06	26.7	1.5	1	23	328	350	328	350	0.96
8	12	2.3e-06	0.00013	22.4	0.4	1	23	356	378	356	378	0.97
9	12	2.5e-06	0.00014	22.3	0.6	1	23	384	406	384	406	0.98
10	12	5.6e-07	3.3e-05	24.4	3.4	1	23	412	434	412	434	0.97
11	12	4.1e-07	2.4e-05	24.8	1.0	1	23	440	462	440	462	0.99
12	12	0.00041	0.024	15.3	0.6	1	20	468	487	468	490	0.94

Sequence Information

Coding Sequence: ATGGCTGTATCTATTGATAAATGTTGCCGAACATGTATGAAAAATAATGTCCCTTTTGTGGACATTCATGAGACCATAATAGACGAGAGTTCTAACCTTCGAATAGCTCATCTATTAATGGATTGTATCATGACAAATGTTTCAAAAGATGATGGATTGCCTCACAACCTTTGTAATGAATGTGTTGATAAGCTTCAACTGTTTTATATATTCCGTAATCTGGCCTTAAGGTCAGAAGAAGAGTTTAAAAAGCTTTTATGTTTGGGCATAAAAGTAAAAGAGGAAGAATTTGACGAGAAATGTAAACTGGAAAGTGTCAATGATGACTTTGAGGATGACGGGGATGACTATGATATGGATTTTAAAGAGGAAAATGAAAATTTCACACAATACAATATCGATTTAACAGAGAATACAAAACTGGCACTGAAAGCTGACACATATGATTGTTTAGTTTGCAATAAAACATTTAAGAGACAGCATCTTCTAACAAGACATATGAAAAAACATAATGAAAATGGTCAAACATGTTCATTGTGTAGTCTGAGTTTTGAAACTGAAACATTATTACTAGAACATATGGTCACTCATACAGTAATAAAAGTGAAAACGGAAAATGACGAGGAACCTCAACTGTTCCCATGTCCAAAGTGTGATTTGACTTTTACAAAGCTCAAATCGCTGGCGATGCACAGAAAGAAACACAAATTGAAAAACGAAACTATCCAGTTGTTTAAATGCAACAATTGCCTAAAAGAGTTTAAGTTGAAAGCTTTGCTTAAGAGGCACATGAAGTTGCACGAGGACAGGCCTCACGAGTGCCCCCAGTGCCCCAAGAAATACTCCAGACGGGACCAACTAATGGTACATATGAATAGACATAACGGAGTCAAACACAAAGTTTGCACTTATTGCAATAAAGGATTCGCCCAGTTATGCAGTTTAAAAGACCACATGCGAATCCACACTGGGGAGACGCCTTTTCTGTGTTCCGAGTGTGGCCGAGGCTTCAAGAACAGTTCGAATCTACGTCAGCATCTCCGTAGGCACGTTGGCATAAAACAGTTTGCGTGTCAGCTCTGTCCCAAGGCATTTGTCACCAAAGGTCAAATGAAAAGCCACATGATGACTCACACGGGCGAACATCCGTTCGAATGTGAGCAGTGCGGGGCCAAGTTCACCAAACCCAACTCGCTCAAGAAGCATCAAATGATACACCTCGGCGTCAAGCCGTTCGCCTGTGACAACTGTCCTAAGAGGTTCACGACCCGCGAGCACCTGAAGCGTCACTACCGCATCCACACGGGCGAGAAGCCGTACCGCTGCGAGTACTGCGAGCGCGCCTTCCGCCAGAGCAACGACCTCGTCAAACACGTGCGCACTCATCTCGGCGAGAACACATACGAATGTCTAAAGTGCGGTATGAAATTCAGACTGCAGAGCGAGTTGAGTAAGCATTATCCGATACACTACATAAACAAGGATGATCCAACGAACACAGACAAAGACACGAAAGTTGCTCCGGCGCCGATTCAAGACATCGTCGACAACTTGGACGGAAGGATTAGAATCACTTTTAATAGTACAGTGTTTGACAAAGATGGCATAGCAGGTGACATAAGGATAGACATTGAGCCTGAAAAGATTTAG
Protein Sequence: MAVSIDKCCRTCMKNNVPFVDIHETIIDESSNLRIAHLLMDCIMTNVSKDDGLPHNLCNECVDKLQLFYIFRNLALRSEEEFKKLLCLGIKVKEEEFDEKCKLESVNDDFEDDGDDYDMDFKEENENFTQYNIDLTENTKLALKADTYDCLVCNKTFKRQHLLTRHMKKHNENGQTCSLCSLSFETETLLLEHMVTHTVIKVKTENDEEPQLFPCPKCDLTFTKLKSLAMHRKKHKLKNETIQLFKCNNCLKEFKLKALLKRHMKLHEDRPHECPQCPKKYSRRDQLMVHMNRHNGVKHKVCTYCNKGFAQLCSLKDHMRIHTGETPFLCSECGRGFKNSSNLRQHLRRHVGIKQFACQLCPKAFVTKGQMKSHMMTHTGEHPFECEQCGAKFTKPNSLKKHQMIHLGVKPFACDNCPKRFTTREHLKRHYRIHTGEKPYRCEYCERAFRQSNDLVKHVRTHLGENTYECLKCGMKFRLQSELSKHYPIHYINKDDPTNTDKDTKVAPAPIQDIVDNLDGRIRITFNSTVFDKDGIAGDIRIDIEPEKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386938;
90% Identity: iTF_01386938;
80% Identity: -