Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392434.1:5139540-5142027[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3e-07 7.3e-06 26.4 2.4 2 23 125 146 124 146 0.98

2 14 0.00041 0.024 15.3 0.1 1 23 149 171 149 171 0.98

3 14 0.0012 0.07 13.9 1.8 1 19 177 195 177 200 0.92

4 14 0.00032 0.019 15.7 0.2 1 23 207 229 207 229 0.98

5 14 6.4e-05 0.0038 17.9 4.7 1 21 235 255 235 258 0.90

6 14 6.1e-05 0.0035 18.0 6.1 1 23 264 286 264 286 0.99

7 14 1.3e-06 7.8e-05 23.2 2.4 1 23 292 314 292 314 0.98

8 14 1.2e-05 0.00071 20.2 1.8 1 23 320 343 320 343 0.95

9 14 1.7e-05 0.001 19.7 0.6 2 23 352 374 351 374 0.93

10 14 0.00035 0.02 15.6 2.1 1 23 379 402 379 402 0.94

11 14 6.4e-05 0.0038 17.9 0.7 1 20 416 435 416 439 0.91

12 14 1.6e-07 9.6e-06 26.0 3.1 3 23 447 467 446 467 0.98

13 14 1.2e-06 6.7e-05 23.4 1.7 1 23 473 496 473 496 0.98

14 14 0.00039 0.023 15.4 0.8 1 23 501 524 501 524 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3e-07	7.3e-06	26.4	2.4	2	23	125	146	124	146	0.98
2	14	0.00041	0.024	15.3	0.1	1	23	149	171	149	171	0.98
3	14	0.0012	0.07	13.9	1.8	1	19	177	195	177	200	0.92
4	14	0.00032	0.019	15.7	0.2	1	23	207	229	207	229	0.98
5	14	6.4e-05	0.0038	17.9	4.7	1	21	235	255	235	258	0.90
6	14	6.1e-05	0.0035	18.0	6.1	1	23	264	286	264	286	0.99
7	14	1.3e-06	7.8e-05	23.2	2.4	1	23	292	314	292	314	0.98
8	14	1.2e-05	0.00071	20.2	1.8	1	23	320	343	320	343	0.95
9	14	1.7e-05	0.001	19.7	0.6	2	23	352	374	351	374	0.93
10	14	0.00035	0.02	15.6	2.1	1	23	379	402	379	402	0.94
11	14	6.4e-05	0.0038	17.9	0.7	1	20	416	435	416	439	0.91
12	14	1.6e-07	9.6e-06	26.0	3.1	3	23	447	467	446	467	0.98
13	14	1.2e-06	6.7e-05	23.4	1.7	1	23	473	496	473	496	0.98
14	14	0.00039	0.023	15.4	0.8	1	23	501	524	501	524	0.95

Sequence Information

Coding Sequence: ATGCGCACCTGCCCCCTCGCTCCTCCACCCCTCGCTCCTCCACCCCTCGCTCCTCCACCCCTCGCTCCTCCACCCCTCGCTCCTCCACCCCTCACTCCTCCACCCCTCGTTCCTCCGCTCCCCTGGTACGTCATTTTTATTTTGTTCTCCCAATTTGGCGACCCATCTAAACATAACGTCGAAAATCTTCAAAAATTGCAAGAATATACAGCCGACCTCGATTTTAAATCAGAAGAGAGTGTCGATGACGAAGACTCTTGTATAGACAAAGTGTCAGACAAAGATGTCACAATTGAAGAGAGCGGAAAGAATAAGGAATCGATGAGTGAATCTGGTGTCAATTTAAGAAACACAAGCGACAAACATGAGAATAAATGCAATATTTGCAGTAAAACCTTTGAACGCAAAGGGAACCTAAAAAATCATCTCAGAACTCACGAGGTCTATAAATGCAAAATATGTCCAGAAATATTGTCGAATCAGATAGAGTACGATAAACACATGGAAATACACCCGCGCGGAATAAAACACGAGTGCAAAGAGTGCGGTCGGACATTGGCAACCAAGGAAAGCTTGCTGAGGCATTGTCAAGCCGTGCACAACATGAGTATAAAAAAGTATAGTTGCCAGTATTGCGATAAAGGAATGGCTACGAAAGAGCAATTGGTTGTACACGAAAGGATGCACACGGGTGTAAAACCGTATGTGTGCAAAAAATGCAATAAAGCGTTTAGTTACAAAGGACACCTAAAGCATCATAATACTGAAGTGCATTTGGCACTTAAGCCTTACGTTTGTGACGTGTGTGATTATAGATTCAAAAGAAAAGACCATTGCCAAAGACACATGTTGACTCATACTCTGATAAAATCTTTCCAATGCAGTGTCTGTAGCAAGACTTTTGGGCAAAAATATCATCTCACTAGTCACATGGCGGTCCATAATGACGAAAGACCCTACAAATGCGATATTTGCAAAAAGACATTTAAAAACAAGGTCAATATACACCTGCACATGTTGGCTGTACACTTGCGCATTTACCCAACGCGCATTGAGTGCGACATCTGTAAGAAGACATTTAAATACAAAACTGCATTAACCAGCCACATATCGGCTAAACATATGGGCTTTACATTTGAGTGCGACTTTTGTTTAAAGATATTTCAACACAAAAGCACTTTACGCAGCCACATGTCGGCTGTACATAAAGCGCATTGTCAAAACGTGCATACCGGTGTTAATTCGTATGTCTGCGGAAAATGCGATAAACTGTTTAGTAGTAAAGCAGACTTAAAGAAACATAATACTGATGTGCATATGGCACCTAAGCCTAACATTTGTGACGTGTGTGATTATAGATTCAAAAGAAAAAGCCATTTGCAAAGACACATGTTGACGCATACTACGATAAGACCATTCCAATGCAGTGTCTGTAGCAAGACTTTTAAGCAAAAAGATTACATGAGTAGACACATGGCGACGGTACATAATCACAAAATATTCAAATGTGACATATGTCGGAATACATTTAAATCCAAGGCGACTATACGTCAGCACATGTCGGCTGTACATTTGGGCCTTAATTGA
Protein Sequence: MRTCPLAPPPLAPPPLAPPPLAPPPLAPPPLTPPPLVPPLPWYVIFILFSQFGDPSKHNVENLQKLQEYTADLDFKSEESVDDEDSCIDKVSDKDVTIEESGKNKESMSESGVNLRNTSDKHENKCNICSKTFERKGNLKNHLRTHEVYKCKICPEILSNQIEYDKHMEIHPRGIKHECKECGRTLATKESLLRHCQAVHNMSIKKYSCQYCDKGMATKEQLVVHERMHTGVKPYVCKKCNKAFSYKGHLKHHNTEVHLALKPYVCDVCDYRFKRKDHCQRHMLTHTLIKSFQCSVCSKTFGQKYHLTSHMAVHNDERPYKCDICKKTFKNKVNIHLHMLAVHLRIYPTRIECDICKKTFKYKTALTSHISAKHMGFTFECDFCLKIFQHKSTLRSHMSAVHKAHCQNVHTGVNSYVCGKCDKLFSSKADLKKHNTDVHMAPKPNICDVCDYRFKRKSHLQRHMLTHTTIRPFQCSVCSKTFKQKDYMSRHMATVHNHKIFKCDICRNTFKSKATIRQHMSAVHLGLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -