Stip003654.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4473472-4476619[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.1e-06 0.00012 22.5 2.9 2 23 144 165 143 165 0.98 2 17 0.68 40 5.2 1.3 1 21 168 188 168 189 0.91 3 17 0.011 0.63 10.9 3.0 1 23 222 244 222 244 0.96 4 17 0.0018 0.11 13.3 1.2 1 23 250 272 250 272 0.99 5 17 1.7e-05 0.00097 19.7 1.0 2 23 293 315 292 315 0.94 6 17 0.00013 0.0074 17.0 4.0 2 23 324 346 323 346 0.96 7 17 2e-05 0.0012 19.5 1.1 2 23 353 375 352 375 0.94 8 17 2.3e-05 0.0013 19.3 2.3 2 23 382 404 381 404 0.96 9 17 2.8e-06 0.00016 22.2 3.5 2 23 411 433 410 433 0.94 10 17 0.0087 0.51 11.2 2.6 2 23 440 462 439 462 0.96 11 17 0.00095 0.056 14.2 1.2 2 23 469 491 468 491 0.94 12 17 1.6e-05 0.00096 19.7 1.4 2 23 498 520 497 520 0.94 13 17 0.00055 0.032 14.9 1.8 2 23 527 549 526 549 0.94 14 17 1.6e-05 0.00091 19.8 1.3 2 23 556 578 555 578 0.94 15 17 2.7e-06 0.00016 22.2 0.7 2 23 584 606 584 606 0.94 16 17 1e-05 0.00059 20.4 0.8 2 23 615 637 614 637 0.94 17 17 5.2e-07 3e-05 24.5 1.8 1 23 645 668 645 668 0.95
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTGTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGTTACATTCGGAATCTTATTTGAACTCTCGGAACGTGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAAGGACCATTGATTAAAGTCGACGTAAAAGTTGAAAGGGAGGAGACTCCAACTCCCAACGATGAAGTCAATCACTCGGATATAACTGTGGCTTTAGATGAAGTATCCAATCAAGATGGCAGAATCGGAAAGAGCAGAAATGAATTAGATGAAACTGATAACAGCAGACATGATAATAATAAATGCAATATTTGCAATAAAACTTTTAGGTTCAAAAAGTACCTAGAAAGTCACATCAGATCTCACAAAGGCTATAAATGCCAAATGTGTCCACAAATATTGTCAAATCAGAGAAAACACTCAAAACACATAAAGTCGAAGCAAGTAATCGACGCTAAATATTGGTGTATCGCTTGCGATGCAACTTTTTTGGAAGTAAACGAGCTAAAATGTCACATCAAAACACACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCATAAGCACGAAACGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTATTAATGGGTTTACACTGAGGAGAAGTTTAAAGGCTCACATGAAAACACACAAGGACGGAACACCGCATGAGCCCCGCAATAGACAAATGTTGACACATGCTGAGATAAAAGAGTGCAACATTTGCAAAAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGAACAGTATACACAAGCACATGTCGACTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAAACATTTAAATACAAGAAGAATATACTCAGGCACATGTTGGCTGTACATTCGGACCTTCCACCGACTCAGTGCAACTTTTGCAGGAAGACATTTAAATACAAATACAATTTAAGCATGCATATGTCTGTAGTACATTCGGACCTTCCACCCAATCAGTGCAACATTTGCAAGAAGACATTTAAATACAAACATAATTTACGCAACCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAAATGCAAATACAATTTAAGCATCCACATGTCGGTTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAAATATAAACAGAGTTTTAACATACACATGTCGGCTGTACATTCGGACCTTCCACACACTCAGTGCAACATATGCAAGAAGACATTTAAATACAAGAAGAATATACTCAGGCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAATTCCAAGGATAATATACGCCATCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAAATATAAACAAAGTTTAAGCAACCATATGTCGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAGACATTTAAATACAAGTCAGGTCTACGCAGCCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCCTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAGCTAGGTCTACGCAGGCACATGTTGGCTGTACATTTGGGCTCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAATACAAAAAGAATTTAAACATACACATGTCGGCTGTACATTAA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHVTFGILFELSERDKIYTICDECIEKLRISTDLKIACGKIIKQGPLIKVDVKVEREETPTPNDEVNHSDITVALDEVSNQDGRIGKSRNELDETDNSRHDNNKCNICNKTFRFKKYLESHIRSHKGYKCQMCPQILSNQRKHSKHIKSKQVIDAKYWCIACDATFLEVNELKCHIKTHFKHRCEVCNRDYQSKGELHKHETVHKDERKFKCSICINGFTLRRSLKAHMKTHKDGTPHEPRNRQMLTHAEIKECNICKKTFKYKLGLRRHMLAVHLGSELRPLKCDICKKTFKYKNSIHKHMSTVHSDLPPTQCDICKKTFKYKKNILRHMLAVHSDLPPTQCNFCRKTFKYKYNLSMHMSVVHSDLPPNQCNICKKTFKYKHNLRNHMSAVHSDLPPTQCNICMKTFKCKYNLSIHMSVVHSDLPPTQCNICMKTFKYKQSFNIHMSAVHSDLPHTQCNICKKTFKYKKNILRHMLAVHSDLPPTQCNICMKTFNSKDNIRHHMSAVHSDLPPTQCDICKKTFKYKQSLSNHMSAVHLGSEEVCNICKKTFKYKSGLRSHMLAVHLGSELRPLKCDICKKTFKYKLGLRRHMLAVHLGSELRPFKCDICKKTFKYKKNLNIHMSAVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388689;
- 90% Identity
- iTF_01388689;
- 80% Identity
- iTF_01388689;